Polynucleobacter yangtzensis: PKF023_07270
Help
Entry
PKF023_07270 CDS
T08788
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pyt
Polynucleobacter yangtzensis
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pyt03009
]
PKF023_07270 (rlmD)
Enzymes [BR:
pyt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PKF023_07270 (rlmD)
Ribosome biogenesis [BR:
pyt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PKF023_07270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_25
Methyltransf_15
Cons_hypoth95
RrnaAD
TRAM
MTS
PCMT
Methyltransf_11
Methyltransf_23
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
BDT76924
UniProt:
A0A9C7CVC5
LinkDB
All DBs
Position
713552..715021
Genome browser
AA seq
489 aa
AA seq
DB search
MALNGKNISRVFQPMRRGDKPVNIEVTEPIKVEALDLDAQGIARLTPNEEELAQGQSGKV
IFIKGALPTELVTYTITSDKARFSKAKVRDILKPAVFRAEPKCKAFGVCGGCTMQHLDIR
AQVAMKQRVLEDDLQHIAKVKPGEILRPMGGPTWEYRHRARLSAVNRSIKKGTVLIGFHE
GKSGYVADMLACEILPKHVSDLLPEMRKLVMGLSIVDRMPQIEIAIGEPEDSQSDDPKKS
KPVTALVFRNLKPLTADDEQLLREFADRHQVWIWLQPKGIETVAPFYPETGKLCYRLPEF
EIEMPFKPADFTQVNHMMNRALVSRAIRLLEVKSTDRVLDLFCGIGNFTLPLARKAKEVL
GIEGLASLTTRAKTNAEHNGLVDKASFIQSDLFEVTPETIASWGKAERWLMDPPREGAME
ICKALAELHLQQSDLLPQRIVYVSCNPKTLARDVEILCHQAGYSLSSAGIINMFPHTSHV
ESIAVFDRP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcaatggcaagaatatctccagggtttttcagccgatgcgtagaggtgataag
ccagtcaatattgaagtgactgagccaatcaaagttgaagccttagatcttgatgctcaa
gggattgcgcgcttaacgcctaatgaggaagagcttgcccaaggtcaaagtggcaaagtc
atcttcattaaaggcgcgttaccaactgagctagtaacttacaccatcaccagtgataaa
gcccgttttagcaaagctaaagttcgcgatattctgaagcctgctgtgtttcgggctgag
cccaaatgcaaagcctttggtgtttgcggtggctgcacgatgcagcatttagatatacgt
gcgcaagttgctatgaagcagcgtgtactagaggatgatctacaacatattgccaaagta
aagccaggggaaattctgcgtcctatgggcgggcctacctgggaataccgtcatcgtgcg
cgcctcagtgcagttaatcgctctatcaaaaaaggcacggtactcattggctttcacgag
ggtaagagtggctatgtggctgacatgctggcctgtgagattttgcctaagcacgtatcc
gacttgctaccagagatgcgcaaattggtgatgggtttatctatcgtcgatcgtatgccg
caaattgaaattgccattggcgagccagaagattctcaatcggatgatcctaaaaagtca
aaaccagttaccgccttggtgtttcgtaatctcaagcccctaacggctgatgacgagcaa
ctgctgcgagagtttgctgatcgacatcaggtgtggatatggctccagcctaaaggtatt
gagacggttgcgccgttttatcccgagactggcaagctttgttaccggctacctgaattt
gaaatcgagatgccatttaaacctgcggactttacgcaggtcaatcacatgatgaatcgc
gcattagtgagtagggcgattcgcttgcttgaggtaaagtcaaccgatcgtgtgctcgat
ttattctgcggcattggtaatttcaccttgccgcttgccagaaaagcaaaagaagtttta
ggcatagaaggtttagcaagcttaaccactagagcaaaaaccaatgctgaacataacggc
ctggtggataaagcaagttttatacaaagcgatttgtttgaagtgacgccagaaacgatt
gcatcttggggaaaggcggagcgctggttaatggatccaccacgcgaaggtgcaatggaa
atttgcaaggcgttagctgaattacatcttcagcaaagtgacttgctccctcagcgcatt
gtgtatgtttcctgcaatcccaaaacgctagcaagggatgttgagatcctgtgccatcaa
gcaggctactccttgagtagcgcagggatcatcaatatgttccctcacacctcccatgtg
gagtctatagcggtttttgatcgcccctag
DBGET
integrated database retrieval system
