Polynucleobacter yangtzensis: PKF023_10550
Help
Entry
PKF023_10550 CDS
T08788
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKF023_10550 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyt03019
]
PKF023_10550 (pnp)
03016 Transfer RNA biogenesis [BR:
pyt03016
]
PKF023_10550 (pnp)
Enzymes [BR:
pyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PKF023_10550 (pnp)
Messenger RNA biogenesis [BR:
pyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PKF023_10550 (pnp)
Transfer RNA biogenesis [BR:
pyt03016
]
Prokaryotic type
tRNA degradation factors
PKF023_10550 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
OB_RRP5_4th
RNase_II_C_S1
DUF4342
Motif
Other DBs
NCBI-ProteinID:
BDT77252
UniProt:
A0A9C7CEE1
LinkDB
All DBs
Position
complement(1059606..1061774)
Genome browser
AA seq
722 aa
AA seq
DB search
MTMFKKAVKSFQWGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVL
SINPDVPADIPALIAASAALAVSGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLI
VAGTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINDLVREAGKPEWDWTAAPK
DEPFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKEVLAKLSEEGDVDAVAVSDIMFE
IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS
TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV
KEVKDYLAEGQVVRVKLLAADERGRLRLSLKAAMADEGGTIAPLAGAAEVAAEAAPATGE
SA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgtttaaaaaagcagtaaaaagttttcaatggggcaatcatcaagtaacaatg
gaaactggcgagattgctcgtcaagctggtggtgccgttatcgttaacgtagatgacaca
gtagtaatgggtacggttgttgcttctaagtctgcaaagccaggacaatcatttttccca
ttgactgttgattacttagaaaaaacttacgcagcaggcaagatccctggtggcttcttc
cgccgcgaaggtcgtccatctgaaggcgagacattgatctcccgtttgattgaccgccca
ttgcgtcctttattcccagaaggtttcttgaacgaagttcaggttgtggtgcacgtgttg
tcaatcaacccagatgtacctgctgatattcctgctttgatcgctgcatctgcagcctta
gctgtttcaggtatcccatttgccggcccagttggagcagcacgcgttggttatgcaaat
ggccaatacctcttgaatccaacacgtacagaacaagctactagcgaactcgatttgatc
gttgctggtacacaagcagctgtattgatggttgagtctgaagcaaatcaattatctgaa
gaagtcatgttgggcgcagttgtatatggtcatgaccaaatgcaaacagcgatcaacgct
attaatgatttagttcgtgaagctggcaaacctgagtgggattggactgctgctcctaag
gacgaaccattcatcgctaaggtaactgcattggctgaagcaccattgcgtgaggcttat
cagattcgtcaaaagggcgcacgttccgacaagctcaaagaaatttctaaagaagtattg
gctaagttatccgaagagggtgatgttgatgctgttgctgtgagcgatatcatgtttgaa
atcgaagcgaagattgttcgtagccagattttgaatggtgagccacgtattgatggtcgt
gatactcgtactgttcgcccaatcgaaattcgtaacggcgtattgccacgcacacacggt
tcagcattgtttactcgtggtgaaactcaagcgttggttgttgcaacattgggtactgca
cgtgatgagcaaattattgatgcgctcgaaggtgaataccgcgatcgtttcatgttccac
tacaacatgcctccgtttgccactggtgaaacaggtcgtgtaggtagccctaagcgtcgt
gaaattggtcacggtcgtttggctaagcgtgcattgattccagtattgccaagtgcagaa
gattttgcatacagcattcgtgtggtttcagagattactgagtccaatggttcttcttca
atggcttctgtttgtggtggctgtttagcaatgatggatgctggtgttccagttaaagca
cacgttgctggcgtagcaatgggcttgatccttgatggcaatcgttttgctgtgttgaca
gacatcttgggtgacgaagatcacttaggcgatatggactttaaagtggctggtacagcg
aatggtattactgcattgcagatggacatcaaagtacaaggtattactaaagaaattatg
caagtagcattagcgcaagctaaagaaggccgcttgcacatcttgagcaagatgcaagaa
gcgatgggttcagttcgtacagaattgtcagcacacgctccacgcatggtttctttcaag
attcatccagacaagattcgtgaagtaatcggtaaaggcggcgcaacaattcaagcgttg
actaaagaaacaggttgcagcatcgatattaaagatgacggcactgtaaccattgcttct
acatctgctgaaggcatggcagaagcaaaagcacgtatcgaaggcattactgctgaagct
gaagtaggcaagatctacgaaggtccagttgtgaagttgctcgaattcggtgctttggta
aacattcttccaggtaaggatggtctcttgcatatctctgaaatttccaatgagcgtgta
aaagaagttaaagactatttggcagaaggccaagtagttcgcgtgaaattgttagctgct
gatgagcgcggtcgtttacgtttgtcactaaaagctgcgatggctgatgagggtggcacg
attgctcctttagctggtgctgctgaggtggctgcagaggctgctccagcgactggcgaa
tccgcttaa
DBGET
integrated database retrieval system
