Polynucleobacter yangtzensis: PKF023_13160
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Entry
PKF023_13160 CDS
T08788
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKF023_13160 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyt03019
]
PKF023_13160 (rhlE)
Enzymes [BR:
pyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKF023_13160 (rhlE)
Messenger RNA biogenesis [BR:
pyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKF023_13160 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDT77513
UniProt:
A0A9C7FJY9
LinkDB
All DBs
Position
complement(1387080..1388537)
Genome browser
AA seq
485 aa
AA seq
DB search
MTNTATEINSSTGVSEAANPSVTDTDTAATTSPPATITFADFGLDPKIQKAVLEQGYNTP
TPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQKILRHASNSASPARHPIRALVLT
PTRELAVQVAENAANYSKHTDLRAAVVYGGVDMKEQVGILRNGVEILIATPGRLLDHIGS
KVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYL
RTPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARTRAGLSRQCIIFTNSRLGC
AKLSRALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPDMPCVI
NHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDVKPLPEGVP
AQSRPSSSSYGSAPAKMSDPFFYKPYEPSASTASTTDPAKPEEKKVGITPAKPAVGALLG
GFKKK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgctactgaaataaattcttctacaggggttagcgaagccgctaaccct
agtgttactgacactgacactgctgccactacttcacctccggcaacaatcacttttgct
gactttggtttagatccgaaaattcaaaaagcggttctggagcagggctataacactcca
actccgattcaagcgcaatcgattccgcatgtcttagcgggaagcgacctcatgggcgct
gcgcaaaccggtaccggtaagacagctgcctttgtattgccgatcattcaaaagattttg
cgtcacgctagcaatagcgcgtcaccagcgcgtcatcccattcgtgcattggttctcacg
ccaacccgtgagttggccgtgcaagtggctgaaaacgctgcgaactactcaaagcacact
gatctgcgcgctgcagtggtctacggcggtgtggacatgaaagagcaagtaggtattttg
cgtaatggcgtagagatcctgattgccacccctggtcgtttgcttgatcacattggttca
aaagtggccaacctctcgcaagtagagatcttggttttggacgaagccgatcgcatgctc
gacatgggtttcttgccagatctacaacgcatcattgatttaattccggcgcaaaggcaa
accttattgttctcggcgactttctcaccagaaatcaaaaagctggcgcaaagttatttg
cgtaccccagtgactgttgaggttgctcgtcaaaatgctgctgccgatacggttaagcaa
gtagtgcatatggtttcttccgccgataagcaacgtgcgattgtgaaggtgcttgaagca
cgcacacgtgcgggcttatcacgtcaatgcatcatctttaccaatagccgtttgggctgt
gcaaagttatcacgcgccttagagcgtgatggtattaaagcgggcgcgattcatggcgat
aagagccaaggtgaacgtactttaactttggatgcatttaagtctggcgccatcgaagct
ttagtggcgactgatgtagctgctcgtggtttggatattccggatatgccttgcgtaatc
aatcacgaactgccatacaacgcagaagactttattcaccgtatcggtcgtaccggtcgc
gctggcagcaagggcgatgcgattgcattggttgatgctagtgagaaacgcttactcgac
gatattgaaaagttgatgaagcgtaaattggatgtgaagcctttgcctgaaggtgtgcct
gcacaaagtcgcccatcatccagtagctatggcagtgcaccagcaaaaatgtctgatcct
ttcttctacaagccttacgagccatctgcatctacagcctccactacagatcctgcaaag
cccgaagagaaaaaagtaggtattacacctgctaagcctgccgttggtgctttgctcggt
ggctttaaaaagaaataa
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