Polynucleobacter yangtzensis: PKF023_17590
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Entry
PKF023_17590 CDS
T08788
Symbol
uvrA
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PKF023_17590 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyt03400
]
PKF023_17590 (uvrA)
DNA repair and recombination proteins [BR:
pyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PKF023_17590 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PKF023_17590 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_21
RsgA_GTPase
BCA_ABC_TP_C
AAA_22
DnaJ_CXXCXGXG
AAA_25
AAA_23
nSTAND3
Viral_helicase1
APS_kinase
cobW
Motif
Other DBs
NCBI-ProteinID:
BDT77956
UniProt:
A0A9C7FIR5
LinkDB
All DBs
Position
1822765..1825662
Genome browser
AA seq
965 aa
AA seq
DB search
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDTIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPDHDLPLEAQSVSQMVDTVLSMPEDTKFMILAPVISERKGEFVDLFQDLQAQGFVRFRV
RSGGGTANAAKAEIFEVDQLPTLKKNDKHSIEVVVDRIKVRPDIQQRLAESFETALRLAD
GKAMIVDMDTGKEMIFSSKFACPVCSYSLQELEPRLFSFNNPMGACPSCDGLGHQSFFDP
KRIVAHPDLSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDVEKPFETLNKKQQDLILLGS
GDVTIPFEYINERGKNSIREHAFEGIVANFERRYRETDSMTVREELSRYQNVQTCPECNG
SRLRKEARFVKVGEKKQSRAIYEISALPLKEAKEYFETLELKGAKREIADKIVKEIGARL
RFLNDVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDWVIDIGPGAGVHGGEVVAQGTPAEVEANPNSL
TGAYLAGREAIAVPENRIPVNDRFLEIIGARGNNLQSVHAKIPVGLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSNAEPAAHDAIKGLDHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPASRERGYEAGRFSFNVKGGRCDSCEGDGVLKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAHEFFEAVPVVKRKLKTLLDVGLGYVKLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEDVAKNEVSFTGHYLAPLLTRKAPTPVA
SKKKK
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaatcaagatccgcggtgcccgcacccacaacctcaaaaacatcaatcta
gacatccctagagagaaattagtcgtcctcactggtttatccggttcaggcaaaagctca
ttggctttcgacactctttatgcagaaggccagcgccgatatgttgagtccctctctgca
tacgcacgtcagtttttacaactcatggaaaaaccagacgttgacacgattgaagggtta
tcgccagcgatttcgatcgagcaaaaagctactagccataaccctcgatcaaccgtaggt
accgttactgaaattcatgattacttgcgtttgctatttgcacgtgccggaacgccgcat
tgtccagatcacgatcttccattagaagcgcaaagcgtttctcaaatggtcgacaccgta
ttgtcgatgcccgaagatacgaagtttatgattttggctcctgttatcagcgagcgaaaa
ggcgaattcgttgacctcttccaagacctacaggcacaaggctttgtgcgcttccgggta
cgctctggcggcggcacagctaatgctgctaaggcggagatctttgaagttgatcaacta
ccaacgctgaagaaaaacgataaacactcgattgaagtggttgtcgatcgcattaaagta
cgccccgatattcagcaacgtttagcggagtcttttgagactgctttgcgcctagctgat
ggcaaagccatgatcgttgatatggatactggcaaagagatgatcttctcaagcaagttt
gcttgcccagtgtgctcatactccttgcaagaattagagcctcgcctcttctccttcaat
aatccaatgggcgcttgcccatcctgcgatggtctaggccaccagtccttctttgatccc
aaacgaattgttgctcatccagatttatcgctggcatcaggagccattaaaggctgggat
cgtcgtaatcagttctatttcaagttactgcagaccttagctaagcatggcggcttcgac
gtagaaaaaccatttgagacactcaacaagaaacagcaggacctgattttattgggctct
ggcgatgtcaccattccatttgagtacatcaacgagcgtggcaagaacagcattcgtgag
catgcttttgaaggcattgttgcgaactttgaaagacgctatcgcgaaaccgactccatg
acagtgcgtgaagaattgtcgcgttatcaaaatgtacaaacatgtcctgaatgtaacggc
agtcgtttacgcaaagaagctcgctttgtcaaagtgggcgagaaaaaacaatcgcgcgct
atttatgaaatcagcgccctacctctaaaagaggcaaaagaatattttgaaacgcttgag
ctcaaaggtgctaaacgagaaatcgccgacaagattgttaaagagattggtgcacgtcta
cgctttttaaatgacgtaggccttgattacctttctctagaacgtagtgcagatactctt
tcaggtggtgaagcgcagcgtatccgcctggcaagccagattggctctggcttaaccggc
gtcatgtacgtcttagatgaaccatcgattggtctacatcaacgtgataatgaccgcctc
attggcacgctaaaacacttacgtgatttgggcaatagcgtcttagtggttgaacacgat
gaagatatgattcgcgcctctgactgggtgattgatattggccctggagcaggcgttcat
ggtggtgaggtggttgctcaaggcaccccagcagaagtagaagccaatccgaactcttta
actggcgcttaccttgctggacgcgaggcgatcgctgttccagaaaatcgcattccagta
aacgatcgtttcttagaaatcattggtgcacgcggcaataatttgcaatcagtgcacgcc
aagattccagttggattgttaacctgcgttactggcgtttcaggctccggtaaatcgact
ctcattaatgacaccctgcatcatgctgtagcccagcatctatatggctctaatgcagaa
ccagcagcgcacgatgcaattaaaggtttagatcattttgacaaagtcattagcgttgac
cagtcaccgattggcagaacaccacgctccaacccagccacttatacgggactctttact
ccaatcagagaactctttgcaggcgttccagcttcacgcgaacgtggctatgaggcaggt
cgtttctcttttaacgttaaaggtggtcgctgcgattcttgtgagggcgacggcgttctc
aaggtagaaatgcatttcttgccagatgtctatgttccttgcgatgtttgtcacggtaaa
cgctataaccgcgagactttagatattcgttacaagggtaagaatattcatgaagtgcta
tcgatgaccatcgaacaagcccatgaattctttgaagcagttcctgtagtaaagcgcaaa
ctcaaaacattgcttgatgttggcttgggttatgtgaagcttggacaaagcgcgaccact
ttatctggcggcgaagcgcaacgcgtaaagctctctctagaactttccaaacgtgacact
ggcagaaccttgtacatcctcgatgaaccgactactggcttacatttccatgacatccag
ttattgctgacagtcattcagacactcaagaaacagggcaacacgattgtcatcattgag
cacaatctcgatgtcattaagacggcagattggattattgatctaggtcctaagggtggt
gctggtggtggacagattattgctactggtacaccggaagatgtggctaagaatgaagtg
agttttacaggtcactacttggcaccattactaactcgcaaagcgccgacccctgtagca
agcaaaaagaaaaagtaa
DBGET
integrated database retrieval system
