Herpailurus yagouaroundi (jaguarundi): 121019373
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Entry
121019373 CDS
T07555
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
pyu
Herpailurus yagouaroundi (jaguarundi)
Pathway
pyu03440
Homologous recombination
pyu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121019373 (PALB2)
03460 Fanconi anemia pathway
121019373 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyu03400
]
121019373 (PALB2)
DNA repair and recombination proteins [BR:
pyu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121019373 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
121019373 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121019373
NCBI-ProteinID:
XP_040314685
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MEEPPGKPLSYEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSVKKTAEEHDCLFQ
QDISPQLNHSESKNKVSPCETLQISTHLDEETGEKTPITLGIEPESFNLGHGPVEQLHIQ
SDIQEHFPYQVSGPSGEKRQSKLPERRKQQQRTLTSQARESFFDTDSLILSGKRLKELEE
INRENPRTPVTRRTYLSSSTCDILDSPAPVTETNVRGVLTPPTAKPQRVVDALVRGNHFP
TVSTLASFTPSNNSSGQHLEHKPPKGDCELITHGLKNIIPASPVNLEAQDQKMTVSTDNP
EVNKAVSASGQLPRSPDLETDNLCSVNEFAYNNLSANGNQNLKGQNHTEECLKSPHNTLD
DRNESPQEKEVVSQSKSLSPEVISPASAENQTHSCTMLEGLPFPAEYYVRTTRRMSSYQR
KVALEVVIQNHLGVKKKGYKNKSKEATKNLNLPSEETDQSGIRTSDTCTRQPSSGNPQKR
PSLTEVNSPTGPPKDNLSRKAVIQPSGRRHGRKTKSICTPVLDDGELLLPTFGTSGVNRS
KEEVALNKEQNGKAIIHGKKDDRQKEDSLSSRNNAYLALDSAAFRTSFPKNEMLSLKQLS
SVLKTTDFQLPDEDFGPLKLKKLKSQSEKSVEPFVSKMYGDKLLKEGNCVVLEEMTPTQI
DIEMEDLEEEILVLPGKAQPKTPNPTSQPQKKGLSSSIVLFTPFNTVTPEDNDRLTADVC
SPAFPILGTTPAFSSQARCERVSTEVVGSTCSVPQLPHLKDYDRKQGDGWASPSKSDGSP
VVSGREGQPSCDSDSGSQAKLLPTESVTSEENQLCGNMHVESWKQSTEQTEVADLPACNG
LIPGHLQLVSKLKNPSGSCSVDVSAMWWEIAGFKEPCIITACEYVVSLWKPLDTWQWEKL
YSWHFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRSLLCSSDGGCEKQVLLSSGNIKAV
LGLTERRLVSSSGTLCDQRVEIMTFAEDGRSKEKQFLMSPEETVLTFAEVQGVQEALLGT
TVMNNIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESEPLGSPV
FQLIVINPKTTLSVGVMLYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTA
LLPPVSDQHWSFVKWSGTHSHLLAGQKDGNIFVYRN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaaacctctcagctatgaggaaaaggaaaagttgaaggaaaag
ttagcattcttgaaaagggaatacagcaagacgctggcccgcctccagcgtgcccaaaga
gctgagaaggttaagaattctgttaagaaaacagcagaagaacatgattgcttgttccag
caggacatttcaccacagctaaaccactcagaatctaaaaataaagtatctccttgtgag
acattacaaatcagcacccatctggatgaagaaactggagaaaagacacctatcacactt
ggcattgagcctgagtccttcaaccttggacatggccccgtggaacaattacatatacaa
agtgatatccaagaacattttccctaccaggtcagtggtcctagtggtgagaaaaggcag
agtaagttgccagagagaagaaagcagcagcagagaacattaacttcacaagcgagagaa
tctttctttgacacggattcactcatactctctggaaaaagactaaaagaactggaagaa
atcaatagagagaatcctagaacacctgtaactagaagaacttacctttcaagttctacg
tgtgacattctggattctccagcaccagtgacagaaactaacgtaaggggtgtattaact
ccaccaactgccaaaccacaaagagttgttgatgcactcgtaagaggaaatcatttcccc
acagtgtctacacttgcttcatttactccatcaaataacagtagtggtcagcaccttgaa
cataagcctcctaaaggcgactgtgaactcattactcatggtttaaaaaacattatccct
gcttcacctgtaaacctagaggcacaagaccaaaaaatgactgtctctacagataaccca
gaagtaaataaagctgtaagtgcaagtggccagctgcctagaagtcctgacttagagaca
gataatttgtgctctgtgaatgaattcgcttacaataacttatcagcaaatggaaaccaa
aatttaaaaggacagaatcacacagaggagtgtttaaaatctccccataacactcttgat
gatagaaatgaaagtcctcaggaaaaagaggttgtaagtcaatctaagagtcttagccca
gaagtaatctctcctgcttctgcagaaaatcaaacacattcttgcacaatgcttgaaggc
cttccatttcccgcagaatattatgttagaacaacacgacgcatgtcaagttaccagaga
aaagtagccctggaagttgtaattcaaaatcatttgggtgtcaaaaagaaagggtataaa
aataaaagtaaggaggcaactaaaaatttaaaccttcccagtgaagaaactgaccagagt
ggaattaggacctctgacacatgcacaagacaaccaagttcaggaaatcctcagaaacgt
ccctctttaactgaagtcaactctcccactgggccccctaaagataacctttccaggaag
gcagttatccagccatctggtaggagacacggaagaaaaacaaagtcaatctgcacccct
gtattagatgatggtgaactccttttgccaacttttggcacatcaggtgttaatagatcc
aaggaagaggttgccttgaacaaagagcagaatggaaaggcaattattcatgggaagaaa
gatgatcgtcaaaaagaggactccctttcttccagaaataatgcttatttggctttggat
tctgctgcattcaggacttcatttcctaagaatgagatgctaagtttaaagcaactgtcc
tctgttctcaaaaccacagattttcagttacctgatgaagactttggacctcttaagctt
aagaaactgaagtcccaatcagaaaaatcagtggagccttttgtatcaaaaatgtatggg
gataagctccttaaggagggaaactgtgttgttttggaagaaatgacacctacacaaatt
gatattgaaatggaggacttggaagaggaaattcttgttctcccaggaaaagcacaacct
aaaacaccaaacccaacaagccagcctcagaagaagggcctttcttcatccatagtactt
ttcactccttttaataccgtcacccctgaggataatgacagactgacggcagatgtgtgt
tcgcccgccttccccatcctaggcactactccagctttcagctcccaagcacgctgtgaa
agagtgtccacggaggtggttggatcaacttgctctgtaccccaacttcctcacttgaaa
gactatgatcggaagcaaggcgacggttgggccagcccctcaaaatcagatggcagcccg
gttgtgtcaggtcgggaaggacagccttcctgtgacagtgattctggttcccaagcaaaa
cttcttcccactgagtcagtcacttccgaagaaaatcagctgtgtggaaatatgcacgtg
gagtcgtggaaacagtccactgagcagactgaagtagcagaccttcctgcttgtaatggc
ttaatcccaggccacctacaattggtttcgaagttaaagaatccttctggttcctgttct
gtggacgtgagtgccatgtggtgggaaatagccggtttcaaagagccatgtatcataact
gcctgtgaatacgtagtttctctttggaaacctctagatacttggcagtgggaaaaactt
tattcctggcactttacagaggttccagtgttacagatagttccagtgcctgatgtttgt
aacctcgtatgcgtggctttgggaaatttggaaatcagggaaatcagatcattactttgt
tcctctgatggtggatgtgaaaagcaagtgctactgagttctggaaatataaaagctgtg
cttggcctgacagagaggaggctagtcagtagcagtgggaccctttgtgaccaacgagta
gaaatcatgacatttgcagaagatggaagaagcaaagaaaaacaatttttgatgtcccct
gaagagaccgtactaacttttgctgaggtgcaaggggtgcaggaagctctgcttggtacc
actgtaatgaacaacattgttatttggaatttaaaaactggtcagctcctgaaaaagatg
cacattggtgattcctaccaagcttcagtctgtcacaaagcctattctgaaatggggctc
ctgtttgttgtcctgagccatccttgtgccaaagagagtgagccgttgggaagccccgtg
tttcagctgattgtgattaaccctaagacaaccctgagtgtgggtgtgatgctctactgt
cttccccaagggcaggctggaaggttcctggaaggtgatgtgaaagatcattttgcagcg
gcagtattgacttctggaacaatcgccatctgggacttacttctgggtcattgtactgcc
ctcctcccacctgtctctgaccaacattggtctttcgttaaatggtcaggtacacattct
catttgttggccggacaaaaagatggaaatatatttgtgtaccgcaactaa
DBGET
integrated database retrieval system
