Puma yagouaroundi (jaguarundi): 121029245
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Entry
121029245 CDS
T07555
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
3.6.4.13
]
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu03013
Nucleocytoplasmic transport
pyu03015
mRNA surveillance pathway
pyu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121029245
09122 Translation
03013 Nucleocytoplasmic transport
121029245
03015 mRNA surveillance pathway
121029245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyu03019
]
121029245
03041 Spliceosome [BR:
pyu03041
]
121029245
Messenger RNA biogenesis [BR:
pyu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121029245
Spliceosome [BR:
pyu03041
]
Complex C
Other components
EJC/TREX
121029245
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121029245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF6423
Motif
Other DBs
NCBI-GeneID:
121029245
NCBI-ProteinID:
XP_040329058
LinkDB
All DBs
Position
Unknown
AA seq
422 aa
AA seq
DB search
MNPSGDSSPSPPAGPGMAENDVDNELLDYEDEVETAAGGDGAEAPAKKDVKGSYVSIHSS
GFRDFLLKPELLWAIVDCGFEHPSEVQHECIPQAILGMAVLCQAKSGMGKTAVFVLHTLQ
QPEPVTGQVSVLVMCHTQELALQISKEYECFSKYMPNVKVVVFFGGXIKKDEEVLKKNCL
HIIVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM
FSATLSKEIRPVCRKFMQDPMEIFLDDETKLTLHGLQQYYVKLKDNEXNQKLFDLLDVLE
FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL
FGRGMDIERVNIAFNSDMPEDSDTYLHQVARAGQFGTKGLAITFVSDENNAKILNDAKIL
LH
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttccggagactcctccccttctccccctgccggcccaggaatggcagagaac
gatgtggacaatgagctcttggactatgaagatgaggtggagacagcagcagggggagac
ggggctgaggcccctgccaagaaggatgtcaagggctcctacgtctccatccacagctct
ggctttcgtgacttcctactgaagccagagttgctctgggccattgttgactgtggcttt
gagcatccatcagaagtccagcatgagtgcatccctcaggccattttgggaatggccgtt
ctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtgctgcacacactgcaa
cagccggagccagttactggacaggtgtctgtgctggtgatgtgtcacactcaggagttg
gctcttcagatcagtaaggagtatgagtgcttctctaaatacatgcccaatgtcaaggtc
gtggtgttttttggtggtnctatcaagaaggatgaagaggtgctgaagaagaactgcttg
catatcatcgtggggacccctggccgcatcctagccctggctcgaaataagagcctcaat
ctcaaacacattaaacactttatcttggatgaatgtgataagatgcttgaacagctcgac
atgcgtcgggacgtccaggaaatttttcgcatgaccccccatgagaagcaggtcatgatg
ttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttcatgcaagaccca
atggagatctttttggatgatgagacgaagctgacgctgcatgggttgcagcagtactat
gtgaaactgaaggacaacgagtagaaccagaagctctttgaccttctcgatgtccttgag
ttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgcattgccctggcccagctt
ctagtggagcagaacttcccagccattgccatccaccgagggatgccccaggaggagagg
ctttctcggtatcagcagtttaaagattttcaacgacgaattcttgtggccaccaaccta
tttggccgaggcatggacattgaacgggtgaacattgccttcaactctgacatgcctgag
gattctgacacctacctgcatcaggtggcccgagcaggccagtttggcaccaagggcttg
gccatcacgtttgtgtcagatgaaaacaacgccaagatcctcaatgacgccaagatcctc
ctacattga
DBGET
integrated database retrieval system
