Herpailurus yagouaroundi (jaguarundi): 121033764
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Entry
121033764 CDS
T07555
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pyu
Herpailurus yagouaroundi (jaguarundi)
Pathway
pyu03008
Ribosome biogenesis in eukaryotes
pyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121033764
09123 Folding, sorting and degradation
03018 RNA degradation
121033764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyu03019
]
121033764
03009 Ribosome biogenesis [BR:
pyu03009
]
121033764
03016 Transfer RNA biogenesis [BR:
pyu03016
]
121033764
03036 Chromosome and associated proteins [BR:
pyu03036
]
121033764
Messenger RNA biogenesis [BR:
pyu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121033764
mRNA degradation factors
5'-3' decay
5' exonucleases
121033764
Ribosome biogenesis [BR:
pyu03009
]
Eukaryotic type
Pre-60S particles
RNases
121033764
Transfer RNA biogenesis [BR:
pyu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
121033764
Chromosome and associated proteins [BR:
pyu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121033764
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN1_D2_D3
XRN1_D1
XRN_M
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
121033764
NCBI-ProteinID:
XP_040336313
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN
QHSECLMCWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKA
LYFCGFPTLKHIKHKFFLKKNGVQVFQQSSRGENMMLEILLSAESDELSIENIASSVLGK
SVFVNWPHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKE
VQGISEYYLRRKGIIINETSAVVYVQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIV
KDIRAFDSRFSSIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPC
EPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANV
GLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYED
DIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNN
KKVRVTVKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGAN
READVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQP
AVNHYSSNSSISSGHLGGLNHSPQSLFVPTQVPSKDDDEFCNIWQSLQGSGKVQHFQPTL
QEKIAVLPQEISQVTQHHKAAFTDNTVKCQQRKHEPHKKFKEECKSPKTESRSQKMSNKQ
TFGGPAKCNIKLLKRNESAEVSENQKVLTGYPNAVDKPNPGIENLLASLNISKENEVQSS
HHEEPPSEELLSPQSFAMKGTRMLKEILKIDASDTVDHKNEMKQFGNEATVSSNRRDEYG
PSSQPQQNKKLTSYMNKPHSTSEYHNVQPMDHVCWPAPSHIPPVSTPVTELSRICSLIGM
PQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPFP
PPIFPNYPPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVP
GKPFHHASYSGTMPMAGGMPSGVHNQFIPLQVTKKRVANKKNFESKEAQSAPATPLQTSQ
PTSSNVTKVIPQETSSASLKSSQITQPASSFQVEGASQGHSMSHHKSTPSSSSRRKSRKL
AVNFGVPKPSE
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtgaagactcaccaattatagaatattatccgcctgattttaaaactgaccta
aatgggaaacaacaggaatgggaagctgtggtcctaatcccttttattgatgagaagcga
ttattggaagccatggaaacgtgtaatcactccctcaaaaaggaagagaggaaaagaaac
caacatagtgagtgcctaatgtgctggtatgatagagacacagagttcacctacccctca
ccatggccagaaaagttccctgccatagaacgttgttgcacaaggtataaaataatatca
ttagatgcttggcgtgtagacataagcaagaacaaaataaccagggttgaccagaaggca
ttatatttctgtggatttcctactctgaaacacatcaaacacaaattttttttgaagaaa
aatggggttcaagtattccaacaaagtagtcgtggagaaaacatgatgttagaaatctta
ctgagtgcagaatcagatgaacttagtatagaaaatatagcttcttcagtgcttggaaaa
tctgtctttgttaattggcctcatcttgaagaagctagagttgttggtgtatcagacgga
gaaactaaattttacttggaagaacctccaggaacacagaagctttatttaggaagaact
gccccgccatctaaagtggtccatcttggagacaaagaacaatctaactggacaaaagaa
gtacaaggaatttcagaatactacctaagaagaaaaggaataataataaatgaaacatct
gcagttgtgtatgttcagttactcacaggtcgtaaataccaaataaatcaaaatggtgaa
gttcgtcttgagaaacagtggtcaaaacaagttcttccttttgtttatcaaactattgtc
aaggacatccgagcttttgactcccgtttctccagtatcaaaacattggatgacttgttt
cctcttagaagtatggtctttatgctgggaaccccctattatggctgcactggagaagtt
caggattcgggagatgtgattacagaaggtaggattcgtgtggttttcagcattccatgt
gaacccaatcttgatgctttaatacagaaccagcataaatattctataaagtacaaccca
ggatatgtgttggccagtcgtcttggagtgagtggataccttgtttcaaggtttacagga
agtatttttattggaagaggatctaggagaaaccctcatggagaccataaagcaaatgtg
ggtttgaatctcaaattcaacaagaaaaatgaggaggtacctggatacactaagaaagtt
ggaagtgaatggatgtattcatctgcagcagaacaacttcttgcagagtacttagagaga
gctccagaactatttagttatatagccaaaaacagccaagaggatgtgttctatgaagat
gatatttggcctggagaaaatgagaatggtgctgagaaagttcaagaaattattacttgg
ctaaagggacatcctgtcagtactctgtctcgttcttcttgtgatttacaaattctggat
gcagctattgttgagaaaattgaggaagaagtcgaaaagtgcaagcaaagaaagaataat
aagaaggtacgagtgacagtgaagccccatttgctgtacagacctttagaacagcaacat
ggagtcattcctgatcgagatgcagaatttcgtctttttgaccgtgtggtaaatgtgaga
gagaacttttcagttccagttggccttcggggcaccatcataggaattaaaggggctaac
agagaagctgatgtactatttgaagtattatttgatgaagaatttcccggaggcttaaca
ataaggtgctcacctggtagaggttatcgactgccaacaagtgccttggtgaatctttct
catgggagtcgctctgaaactggaaatcagaagttgacagccattgtgaaaccacaacca
gctgtgaatcactatagctcaaattcatcaatttcctctgggcatttgggaggcctgaac
cattccccgcaatcactttttgttcctactcaagtacctagtaaagatgatgatgaattt
tgcaacatttggcagtccttacagggatctggaaaggttcagcactttcagccaactcta
caagagaagattgcagttctacctcaagaaataagtcaagtaactcaacatcataaagcc
gcctttactgacaacactgttaaatgtcagcaaagaaaacatgagcctcacaaaaaattt
aaagaagagtgtaagagtcctaaaactgagagccggtcacaaaaaatgtcaaataagcag
acatttggagggcctgccaaatgtaatattaagctattgaagagaaatgaaagtgcagaa
gtctcagaaaaccagaaggttctgactggttacccaaatgctgttgataagcctaaccct
ggaattgagaacttgttagcatccttgaatatctccaaagaaaatgaagtacagtcatct
catcatgaagagcctccaagtgaagaacttttgtcaccacagtcatttgctatgaaagga
actcggatgcttaaagaaatactaaaaattgatgcctctgatactgtggaccataagaac
gaaatgaagcagtttggtaatgaagccactgtttcctctaatagaagagatgaatatgga
ccttcctcacagcctcaacaaaataagaaattaacatcttacatgaataagcctcacagt
actagcgaataccataatgttcagcctatggaccatgtgtgttggcctgctcccagccat
atccctcctgtgtccacaccagtaactgaactttctcgaatttgttcccttattggaatg
ccacaaccagatttctcctttcttagaacaccacagacgatgacagtttgccaggtaaaa
ttatctaatggcttactggtacatgggccacagtgccattctgaaaatgaagccaaggaa
aaagctgcactttttgcgttacaacagttgggctccttaggagtgaatttcccttttcct
ccaccaatatttccaaattatcctcctgctgtaccacccggaaccattcctccagttttt
cctcaacctactggctgggatcactatggaagcaacttagcactgggggcagctaatata
atgccttcatcatctcacctctttggctcaatgccatggggaccaccagtgccagttcct
gggaagccttttcatcatgcttcatattctgggaccatgcccatggctgggggaatgccc
agtggtgtgcacaatcagttcatacctctacaggttactaagaaaagggttgcaaacaaa
aagaactttgagagtaaggaggcccagagtgctccagctaccccacttcagactagccag
ccaacatcttccaatgtcaccaaagtgattccacaggagacttcatcagcttccttaaag
tcctctcaaattactcaacctgcttcttcttttcaagttgaaggcgcctcccaaggccac
agtatgtctcaccacaagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactg
gctgtcaattttggtgttcctaaaccttctgaataa
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