Puma yagouaroundi (jaguarundi): 121039357
Help
Entry
121039357 CDS
T07555
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pyu
Puma yagouaroundi (jaguarundi)
Pathway
pyu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121039357 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pyu03021
]
121039357 (PCF11)
03019 Messenger RNA biogenesis [BR:
pyu03019
]
121039357 (PCF11)
Transcription machinery [BR:
pyu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121039357 (PCF11)
Messenger RNA biogenesis [BR:
pyu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121039357 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
121039357
NCBI-ProteinID:
XP_040345433
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPLAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KDKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPSSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENIENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QSGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPAPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTES
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacagaagaatcttactcaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctttggctgttaaacctccccatcaagttcctgtgcaaccagagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttcgcatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagcaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatccgaaagtgcaagggtgtcggatatgagcaag
agagatcctaggttaaaaaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagacaagagaaaaactgcagaaaaaaaggacaaagatgaacacatgaaatcatctgaa
caccgactcgttggaagtcgaaataaaatcatcaatggcatcgtacaaaagcaggataca
ataacggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcgg
tcaagatcgcgatcacccaagtctcgatcaccaattatacattctccaaagagaagagat
aggcggtcacccaaacgaaggcagaggagtatgtctccaagttccacacccaaagctgga
aagattcgccaatcaggagttaagcaatcacatatggaagagtttacgctaccttccagg
gaagagcgaaatgctaaaaggagtaataaacaagatattcgagatccgaggcgaataaaa
aagactgaagaggaacgaccacaagaagctgcgaatcagcattctacaaaatccggcact
gaaccaaaggagaatatagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgaaccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
accgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagaggtcaccattcaatgat
cgttttccacttaagcgacctagatacgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggcctcgatacaaatcagcgacttacagctttagctgaagacaga
ccattatttgatggacctagtaggccatcagtaacaagagatggtccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
aggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acgcctctgcggtttgaggggccgattggtcaggcaggaggaggtggttttcggtttgaa
ggttcacctggtctgaggtttgagggatctgcaggtggtttgcgatttgagggaccaggg
ggccagcctgtgggaggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
cggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaagggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggtccccatggtcagtcagtagctggtttgaggttt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcagcca
ggggttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtaccaggaggtggcctgagaattgaagggcctctaggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattacatgggcagccaggtcctagatttgaaagaactggtcagcca
ggcccacagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatggcccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacaaaggcttgaatcagtatctttcaat
cagtctggtccatataatgatccacctggcaatgcttttaatgccccatcccaaggacta
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagtttctcgaatccccttaacagagcttctggacactatttt
gatgaaaagaatctccagagttcccaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcgtctcaacaggttcttactggtgttgctcagccagtagca
tttggccaaggacaacaatttttaccagttcatccacaaaatcctggagcatttgttcag
aatccttcaggagcccttccaaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattca
gctacaacacaagtaaatgaagttgctgctcagcctgcccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaactgaaacaacgt
tatgatagcgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatatgcagaccacttggactggcattatcggcaaaac
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatttggaagaacgtgcaaagagccagtttttt
gaaaaggtgcatgaagaagttgtgctcaaaactcaggaggctgcaaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaagaagaggaggaatggcatttaaaaaatgctattagagta
gatggaaagatttatcatccatcatgttacgaggattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaatgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaagt
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
