Herpailurus yagouaroundi (jaguarundi): 121042781
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Entry
121042781 CDS
T07555
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
pyu
Herpailurus yagouaroundi (jaguarundi)
Pathway
pyu03015
mRNA surveillance pathway
pyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121042781 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
121042781 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyu03019
]
121042781 (PABPC1)
03041 Spliceosome [BR:
pyu03041
]
121042781 (PABPC1)
Messenger RNA biogenesis [BR:
pyu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121042781 (PABPC1)
mRNA cycle factors
Stress granule specific factors
121042781 (PABPC1)
Spliceosome [BR:
pyu03041
]
Complex C
Other components
Complex C specific factors
121042781 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
121042781
NCBI-ProteinID:
XP_040350064
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaaaggttat
ggatttgtacattttgagacacaggaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaacgagaa
gcagaactcggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gatatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggttttggatttgtaagcttcgaaagg
catgaagatgcacagaaagctgtggatgagatgaacgggaaggagctcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagagttttctccttttggtacaatc
actagtgcaaaggtcatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcctccccagaagaagccacaaaagcagttacagaaatgaatggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagagaatggcaagtgtccgagctgtgcccaatcctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcgtactaccctcctagccagattgctcaactcagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtccacacag
cgtgttgctaacacgtcaacacagacgatgggtccacgtcctgcagctgctgccgctgca
gccactcctgcggtccgcaccgttccacagtataagtacgccgccggggtccgcaatcca
cagcagcatctgaatgcacagccgcaagttaccatgcagcagcctgctgtccatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgagcggctctttcctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagccgtactacaagcccaccaagcgaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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