Pyrobaculum sp. WP30: PYWP30_00177
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Entry
PYWP30_00177 CDS
T04013
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pyw
Pyrobaculum sp. WP30
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pyw03016
]
PYWP30_00177
Enzymes [BR:
pyw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PYWP30_00177
Transfer RNA biogenesis [BR:
pyw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PYWP30_00177
Prokaryotic type
tRNA splicing ligases
PYWP30_00177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKT33848
LinkDB
All DBs
Position
complement(158235..159689)
Genome browser
AA seq
484 aa
AA seq
DB search
MRNIPINKVNDYVWEIPPGVKPCQKVPVRIYADSALLEKMKADMTIEQGINVGCLPGIYK
YSIILPDGHQGYGFPIGGVAAIDAEEGVISPGGIGYDINCGVRVLRTNLTEEEVRPKLKE
LVDAIFRLVPPGVGGTGHLRLSPGEFERALAEGVEWAVQKGYGWAEDMEYIEERGSWKLA
DPSKVSEKAKARGRDQLGTLGSGNHFLEIQVVDKIFDEKAAKTFGIEREGQVVVMIHTGS
RGFGHQVATDYLLIMERNMRRWGLNLPDRELAAAPLKDKVAEDYIKAMASAANFAWTNRH
IIMHWVREAFKKVFGSIEKVGLELVYDVAHNIAKLEEHVVDDKGTVRKVWVHRKGATRAF
PPGRPEIPAKYREIGQPVLIPGSMGTASWILVGTPEAMKLTFGTAPHGAGRVLSREAAIR
MYPPHKVQEEMAKRGIIVRSAETEVISEEAPWAYKDVDRVVETAHQVGFARKVVRQRPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatatccctattaacaaggttaatgactacgtctgggagataccgcccggcgtc
aagccctgccagaaggtacccgtgaggatatatgcagacagcgccctcctggagaagatg
aaggccgacatgaccatcgaacagggcataaacgtcggctgcctccccggcatatacaaa
tacagcatcatcctgcccgacggccaccagggctacggcttccccatcggcggcgtcgcc
gccatagacgcagaggaaggcgtgatctcgccaggcggcatcggctacgacatcaactgc
ggcgtccgcgtccttaggacgaacctcacggaggaggaggtgaggcccaagcttaaggag
ctggtggacgccatcttccgcctggtgcctccaggcgtgggcggcacaggccacctcagg
ctgtcgccaggggagttcgagagggcgctggccgagggcgtggagtgggccgtgcagaag
ggctacggatgggccgaggacatggagtacatagaggagcggggctcctggaagctggcg
gacccctcaaaggtcagcgaaaaggccaaggcgcgcgggagggatcagctcggcacgctg
ggctcaggcaaccacttcctagagatccaagtggtggacaagatattcgacgagaaggcc
gccaagaccttcggcatagagcgggagggccaggtggtggtcatgatacacacaggtagc
cggggcttcgggcaccaggtcgccacagactacctactgatcatggagaggaacatgagg
aggtggggcctcaacctccccgacagggagctcgccgcggcgccgctgaaggacaaggtg
gctgaggactacataaaggccatggcctccgccgccaacttcgcctggaccaaccgccac
ataatcatgcactgggtcagggaggccttcaagaaggtcttcggctccatagagaaggtc
ggtctcgagctggtatacgacgtggcccacaacatcgccaagctggaggaacacgtagtc
gatgataagggcaccgtgaggaaggtctgggtccaccgcaaaggcgccacgagggccttc
ccgcctggcaggcccgagataccggctaaatacagagaaataggacagcccgtcctcatc
ccgggcagcatgggcacagcctcctggatactggtaggcacgccggaggccatgaagctc
accttcggcacggcgccgcacggcgcaggccgcgtcctcagcagagaagctgccataagg
atgtacccaccgcacaaggtgcaggaggaaatggccaagagaggcatcatcgtgagaagc
gccgaaaccgaggtcatctcagaggaagccccctgggcctacaaagacgtagaccgcgtg
gtcgagaccgcgcaccaagtaggcttcgccagaaaagtcgtcaggcagaggcccataggc
gtcgtgaagggctga
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