Pyrobaculum sp. WP30: PYWP30_00902
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Entry
PYWP30_00902 CDS
T04013
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
pyw
Pyrobaculum sp. WP30
Pathway
pyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYWP30_00902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyw03019
]
PYWP30_00902
Messenger RNA biogenesis [BR:
pyw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYWP30_00902
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PYWP30_00902
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_NUD
DZR
Zn_ribbon_DUF2089
ECR1_N_2
DUF7130
Zn_ribbon_6
Prok-RING_1
Auto_anti-p27
DUF7129
Cas12f1-like_TNB
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AKT34538
UniProt:
A0A0K1E1U4
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All DBs
Position
complement(805757..806293)
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AA seq
178 aa
AA seq
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MKKTVVTPGETLAYVEEFEVKGSAYSVDYRYLSSVLGVAAFDEKTHIAVVRPLKDPAIPP
PGSVAYCQVAGKGRRAYQLRCFAVEGQRGPVDLKYAFTGVLPYFFADGELGIGDYIRAKV
VSTYGPPLVVSIRGATYGSVLSRCPHCGSVLKRRGMALYCPNCSTEVRRKIAVGHYTA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaagaccgtggtcaccccaggggagactttggcatatgtggaggagttcgaggtt
aagggctctgcctacagcgtagactacaggtatctatcctccgtgttgggcgtggcggct
tttgacgagaagactcacatagccgtggtgaggccgctgaaagacccggcgatacccccg
cccggctctgtggcgtattgccaggtggctggaaaggggaggagggcctaccagcttagg
tgcttcgccgtcgaggggcagaggggccccgtcgatctcaaatacgccttcaccggggtc
ttgccgtacttcttcgcagacggggagctgggcataggagactacatacgggctaaggtc
gtctcgacctacggcccgccgctggtggtgagcatacgcggagccacctacggctctgtg
ttgtcccgttgcccccactgcggctccgtgttgaagaggcgcgggatggctctctactgc
ccaaactgctccactgaagtaaggcggaaaatagctgttgggcactacacagcataa
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