KEGG   Pyrobaculum sp. WP30: PYWP30_00902
Entry
PYWP30_00902      CDS       T04013                                 
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
  KO
K07573  exosome complex component CSL4
Organism
pyw  Pyrobaculum sp. WP30
Pathway
pyw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pyw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PYWP30_00902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pyw03019]
    PYWP30_00902
Messenger RNA biogenesis [BR:pyw03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PYWP30_00902
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PYWP30_00902
SSDB
Motif
Pfam: Zn_ribbon_NUD DZR Zn_ribbon_DUF2089 ECR1_N_2 DUF7130 Zn_ribbon_6 Prok-RING_1 Auto_anti-p27 DUF7129 Cas12f1-like_TNB DZR_2
Other DBs
NCBI-ProteinID: AKT34538
UniProt: A0A0K1E1U4
LinkDB
Position
complement(805757..806293)
AA seq 178 aa
MKKTVVTPGETLAYVEEFEVKGSAYSVDYRYLSSVLGVAAFDEKTHIAVVRPLKDPAIPP
PGSVAYCQVAGKGRRAYQLRCFAVEGQRGPVDLKYAFTGVLPYFFADGELGIGDYIRAKV
VSTYGPPLVVSIRGATYGSVLSRCPHCGSVLKRRGMALYCPNCSTEVRRKIAVGHYTA
NT seq 537 nt   +upstreamnt  +downstreamnt
gtgaagaagaccgtggtcaccccaggggagactttggcatatgtggaggagttcgaggtt
aagggctctgcctacagcgtagactacaggtatctatcctccgtgttgggcgtggcggct
tttgacgagaagactcacatagccgtggtgaggccgctgaaagacccggcgatacccccg
cccggctctgtggcgtattgccaggtggctggaaaggggaggagggcctaccagcttagg
tgcttcgccgtcgaggggcagaggggccccgtcgatctcaaatacgccttcaccggggtc
ttgccgtacttcttcgcagacggggagctgggcataggagactacatacgggctaaggtc
gtctcgacctacggcccgccgctggtggtgagcatacgcggagccacctacggctctgtg
ttgtcccgttgcccccactgcggctccgtgttgaagaggcgcgggatggctctctactgc
ccaaactgctccactgaagtaaggcggaaaatagctgttgggcactacacagcataa

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