Pyrobaculum sp. WP30: PYWP30_01461
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Entry
PYWP30_01461 CDS
T04013
Name
(GenBank) ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
pyw
Pyrobaculum sp. WP30
Pathway
pyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYWP30_01461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyw03019
]
PYWP30_01461
Messenger RNA biogenesis [BR:
pyw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYWP30_01461
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PYWP30_01461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Luciferase
Motif
Other DBs
NCBI-ProteinID:
AKT35084
LinkDB
All DBs
Position
complement(1288190..1289011)
Genome browser
AA seq
273 aa
AA seq
DB search
MASISPYGKRFISYLRREQIKRLLSTRYRVDGRGPEQVRDVEVKVGVVKTADGSAEVRLG
RTHVVAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIR
HCGYVDFKKLAVEGGKAYVLWVDLYVINDDGNLVDAANLAAVAALRNTQLPAVVKDETGI
KLGRNNKSPLQVEVAKVPVAVSVGKIGGVLLLDPTFEEELSLDGRITFTFSEDRIVALQK
SAGHFTQAELETALDLAWRGRERFASALKDVLG
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatatccccatacgggaagcgtttcatcagctatctgcgccgggagcagata
aagagactactctccacgaggtacagggtggacgggagggggccggagcaggttagagac
gtggaggtaaaagtcggcgttgtgaagacggcagatggctccgcggaggtgaggcttggg
aggacacatgtcgttgccggcgtcaaggtgggtctgggccagccgtttcccgacgccccc
gacgagggcgtgttggtggtgagcgcggaggtcctgccccacgcctcgccttacaccgag
gtggggcctccggatgaatcagccatagagcttgcgagggtggtagaccgcggaattaga
cactgcgggtatgtggatttcaaaaaactggcggtagagggcggcaaggcctacgtgctg
tgggttgatctatacgtgatcaacgacgacggcaacttggtagatgcggcgaacctcgcc
gccgtcgccgctttgagaaacacgcaactgccagccgtcgttaaagacgagacggggatt
aagcttggccgcaacaacaagtcgcctctgcaggtggaagtcgccaaggtcccggtcgcc
gtctcagtcggcaagataggaggcgtgttgctcctagacccgacgtttgaggaggagctc
agcctagacggccgcatcaccttcacattctccgaggacagaatcgtggctctgcagaag
tcggccggccacttcacccaagctgagctggaaaccgcgctggacttggcctggagaggc
agagagagattcgcgtcggctttgaaagacgttttgggataa
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