Pyrobaculum sp. WP30: PYWP30_01463
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Entry
PYWP30_01463 CDS
T04013
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
pyw
Pyrobaculum sp. WP30
Pathway
pyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYWP30_01463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyw03019
]
PYWP30_01463
Messenger RNA biogenesis [BR:
pyw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PYWP30_01463
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PYWP30_01463
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
RRP4_S1
KH_1
RRP40_S1
KH_KhpA-B
S1
Motif
Other DBs
NCBI-ProteinID:
AKT35086
UniProt:
A0A0K1E2K6
LinkDB
All DBs
Position
complement(1289748..1290455)
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AA seq
235 aa
AA seq
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MYFVTPRQLIFPGDAVATADSRVEGPVYLDNGKYRSLVVGLVEFRDDGVVIVPLEGVYKP
KRGDLVVGYVTDVLATGWEVDVKSFMPAYLPVGEALHKHVDLETTPLTTFLNIGDVVVAK
VKDVDLTDEYPIILTLKEERVGKVERGTVAEIAPVKVPRVIGKKGTMLNTLMELGCDIVV
GQNGRVWARCKDPRDEVFLASLIKKIETESHVMGLTDRVKAEIENYKKTKQQAAV
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgtacttcgtcacacctcgtcagctgatattcccaggcgacgcagtggccacagccgac
agcagagttgaggggccggtgtatctcgacaacgggaaatacagaagcttggtcgtgggc
ctcgtggagtttagagacgacggcgtggttatagtgccgctggagggcgtgtacaagccg
aagaggggggacctcgtcgtgggctacgtcacagacgtcttggcaactgggtgggaggta
gacgtcaagtcgtttatgcctgcgtatctacccgtaggcgaggccctgcacaaacacgtg
gacctggaaaccacgcccctgaccacgtttctcaacataggcgatgtcgttgtggctaag
gtgaaagacgtagatctgacggacgagtaccccatcatactgacactcaaggaggagagg
gtcgggaaggtggagagaggcacagttgctgagatagcgccagtaaaggtgccgcgggtg
atagggaagaaggggaccatgttaaacacgttgatggagctggggtgcgacatcgtggtt
ggccaaaacgggcgggtctgggctaggtgtaaagacccacgtgacgaggtgttcctagcc
tcgctcataaagaagattgagacggagagccacgtcatgggcctcacagacagggtaaag
gcggagatagaaaactataagaaaacgaagcaacaggcggctgtatga
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