Pyrobaculum sp. WP30: PYWP30_01646
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Entry
PYWP30_01646 CDS
T04013
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pyw
Pyrobaculum sp. WP30
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pyw03016
]
PYWP30_01646
Enzymes [BR:
pyw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
PYWP30_01646
Transfer RNA biogenesis [BR:
pyw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
PYWP30_01646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AKT35263
UniProt:
A0A0K1E3W5
LinkDB
All DBs
Position
1450677..1451240
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AA seq
187 aa
AA seq
DB search
MSLVRSFIAVDIDDLDVARRIEDVQREVARLGLDIKLVERENLHLTLRFLGEIPQSRIND
VVKALVGVKMNKFQIKLSDVGVFPDMSRPRVLWIGVSQGAEQLVRLAYVVRDAVDKFAEH
EEDREFTPHLTIGRIKSGRNVEKLRELVTRYRGVEFGVVTVDKIKLKKSVLTPRGPIYSD
LFVQPLT
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgtcaggtctttcatcgcggtggatattgacgatcttgacgtggcgaggagg
attgaggacgtgcagagggaggttgcgcggcttgggcttgacataaaactcgtggagagg
gaaaatctacatctgactctccggtttttgggggagatcccacagagcaggatcaacgac
gtcgttaaggcccttgtaggagtcaagatgaataagtttcagataaagctgtctgacgtc
ggcgtgtttccagacatgtccagaccgcgggtgttgtggatcggcgtttctcaaggtgca
gaacagctggtaaggctggcgtatgtggtgagggatgccgtggataaattcgccgagcat
gaggaagacagggagttcacgccgcatttgaccataggtaggataaagtccggccgcaac
gtggagaagttgcgggagttagtaacgcgttacagaggggttgagttcggagttgtgact
gtggataagataaagctgaagaagtcggtgttaacgccgagggggcctatttatagcgac
ctttttgtacagcctcttacgtga
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