Pyrobaculum sp. WP30: PYWP30_01856
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Entry
PYWP30_01856 CDS
T04013
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pyw
Pyrobaculum sp. WP30
Pathway
pyw03022
Basal transcription factors
pyw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pyw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PYWP30_01856
09124 Replication and repair
03420 Nucleotide excision repair
PYWP30_01856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pyw03021
]
PYWP30_01856
03036 Chromosome and associated proteins [BR:
pyw03036
]
PYWP30_01856
03400 DNA repair and recombination proteins [BR:
pyw03400
]
PYWP30_01856
Enzymes [BR:
pyw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PYWP30_01856
Transcription machinery [BR:
pyw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PYWP30_01856
Chromosome and associated proteins [BR:
pyw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PYWP30_01856
DNA repair and recombination proteins [BR:
pyw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PYWP30_01856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
nSTAND3
AAA_25
PhoH
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AKT35472
UniProt:
A0A0K1E448
LinkDB
All DBs
Position
complement(1624002..1625762)
Genome browser
AA seq
586 aa
AA seq
DB search
MELFPYRGFRPFQKEVHDAVYRGLLEEKLVLINAPTGLGKTAAVLTAALRYMLDTETSVH
YVVRTRAELEPPVRELSKILNRGVDLDYVVIKSRQDMCCYSSLKKLDYLEFLAECSLLRR
MGRCAYYPPREVQAPLRSVSTYVKFLCASQSCPYEYARQKMSGAKLVISTYYYVFGREHA
DLKGRVVIIDEAHSLFDAVTQLHSIVLSEGDLRAAYKEAKKYGFLDEAAKIYRLLTFIKR
SAGAVDVGDVLGLVADLDLENAIWEITKRKTEEKVNPYTPLLLVKELRDALRGRLRYYAE
VRGEYLAKTLALYPLDPTALIKESLRGVKNVVYISGTLPISIFAESLALPDFVKLDISFS
DFIPRHNYLSVIDVGVTTKFEERTEEMYLRIAERLATAINMSPGGVLAMFPSYDVMKGVR
KYLKISVPHWYEGPQEVDWENLPEKFFIGAVARGRYVEGVEYVKDGKNLLSTVVVVGVPY
PEPSPYLDRRVELLRPRLKERAWSAVYLYHAVVSTRQAIGRLFRSPEDRGVLVFLDRRYA
EPELWNELKDVLTGSLIVSHLEEAAEKTAEFFTSASTASRWPSPRR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
gtggaactcttcccctatcgcggctttaggccctttcagaaggaggtgcacgacgcagtc
taccgcgggcttctagaggagaagcttgtgttaatcaacgcgccgaccggtctcggcaag
accgcggcggtgttgacagcagccctacgctacatgctcgatacagaaacgtcggtgcac
tacgtggtgaggactagggcggagctggagccccccgtgagggagctgtcgaagatctta
aaccgaggcgtcgatctggactacgttgttattaagagtcgacaagacatgtgttgctac
tcctcattaaagaaactcgactacctggagtttctggctgagtgtagcctcctaaggaga
atgggaagatgcgcctactaccccccgagggaggttcaggcaccgcttaggtccgtgtct
acgtacgttaaatttctctgtgcctcccagagttgcccctacgaatacgccaggcagaag
atgagcggcgccaagctcgtcatatctacgtactactacgtctttgggagagaacacgca
gatctcaaaggccgcgtggttataattgacgaagcccactcgctgtttgacgccgtgacc
cagctccacagcatcgtcctgtctgaaggcgatctgcgggccgcgtataaagaggcgaag
aaatacggcttccttgacgaagccgccaaaatctaccggcttttgacatttataaagaga
agcgccggcgccgtagacgtgggggatgtcctggggcttgtggcggatctagacctcgaa
aacgccatatgggagatcaccaagagaaaaaccgaggagaaggtcaacccctacaccccc
ctgctcttggttaaagagctacgggacgccctaagaggcaggctgagatactacgcggag
gtaagaggcgagtacttggctaagacgctcgccctctacccactggaccccacagcgctt
attaaggagtcgctgaggggggtcaaaaacgtggtctatatcagcggcaccttgcccata
tcgatattcgccgagagcctcgcccttcccgacttcgtcaagctggacatatcattctca
gacttcatcccccggcacaactacctctccgtaattgacgtgggggtcaccacaaagttc
gaggagaggaccgaagagatgtaccttcggatagccgaacgccttgcaaccgccattaac
atgtcgccaggcggcgtgttggccatgttcccctcctacgacgtcatgaagggggtgcgg
aaatacctcaagatctccgtaccacactggtacgaggggccccaggaggtggattgggaa
aacctaccggaaaaattcttcatcggcgccgtggcgaggggcagatacgtcgaaggcgta
gagtatgtaaaagacggaaaaaacctcctatccacagtcgtggtggtgggagtcccctac
cccgagccctccccctacctcgacagaagggtggagctgctgaggcccaggctgaaggaa
agagcgtggagcgctgtgtacctctaccacgccgtcgtgagcacacgccaggcaataggc
aggctgttcagaagccccgaagacaggggcgtgttggtgtttctcgacagacgctacgcg
gagcctgagctctggaacgagttaaaagacgtgttgacggggtcgctgattgttagccac
ctagaggaggccgcggagaagaccgcggagttcttcacctccgcgtcaacagcctccaga
tggccatcgccacgacgataa
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