Pyramidobacter sp. YE332: RAH42_06320
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Entry
RAH42_06320 CDS
T09677
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pyy
Pyramidobacter sp. YE332
Pathway
pyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAH42_06320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pyy03019
]
RAH42_06320
03009 Ribosome biogenesis [BR:
pyy03009
]
RAH42_06320
Enzymes [BR:
pyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RAH42_06320
Messenger RNA biogenesis [BR:
pyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RAH42_06320
Ribosome biogenesis [BR:
pyy03009
]
Prokaryotic type
rRNA helicases
RAH42_06320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Ned1_M
SecA_DEAD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WOL41250
LinkDB
All DBs
Position
1347778..1349559
Genome browser
AA seq
593 aa
AA seq
DB search
MTAASFRDFNLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLL
PLLNELEGGGKKPRLLVLSPTRELAMQNAGESEFLGHIRGIATASIVGGMSMEHQIFQLR
RGASVVVGTPGRVLDHIRRGTLDLSDIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKT
WLFSATMPDSVFSLCKRYLKEPLRLELNHEEEQHEDIVHRVYLVPSRQRMEALVNILLWE
KPALCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVATN
VAARGLDVQGVSHVIQLGLPDSMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFMIRS
SEMKVEWLKVPDIQEISVIQRERREESLLELVPAPEIRAWAESLLERSDDAADLAAKLLS
VVVKDIPTGYSLRDSLQRELDQRRERAAARREGRVGSRFDGERRGIGAERARFRGQGLSI
RIAKGRNDQEWSVGRILGALCAALGVSRDEIGNIKMRDSHTEVELSPAAIASLDDGGRRR
LIDRGLISGGSGEPQPRLGGPRRERRFDRSGERLGKRNFERASERRPRYGRDA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcagcaagttttagagatttcaatctgcccgagagttttctcgccgctctcgat
caacgaggctttacgacgccgacgccggttcaggcgcaggtgctgtcgcagcccaatctg
gacacggacatggtcgtgcaggcgcgcacgggttccggcaagacgctggcttttcttctg
ccgctgctgaacgaactcgaaggcggcggcaaaaagccccgcctgctggtgctctcgccg
acgcgcgagctggccatgcagaacgccggcgaatcggaatttttaggccacatcagaggc
atcgccacggcaagcatcgtcggcggcatgagcatggagcaccagatcttccagctccgg
cgcggcgcctcggtcgtcgtcggcacgccgggacgcgtcctcgatcatatccgccgcggc
acgctcgacctgagcgatatcgaaacgctggttctcgacgagggcgacaacatgctcgac
atggggttccgcgacgagctggaagcgatcctcgaagccgccgtgaaccgcaaaaagact
tggcttttctcggcgacgatgcccgactcggtgttttcgctctgcaagcgctatctcaag
gagccgttgcggctggaactgaaccacgaggaggagcagcacgaagacatcgtgcaccgc
gtgtatctggtgccttcgcgtcagcgcatggaagcgctggtcaacatcctgctgtgggag
aagccggcgctctgcctgatattctgccataccaagaccgatacgggagaagtggcgggg
cgtcttcaggaagaaggcctgatggctctggccctgaacggcgacatgacgcagcgcgaa
cgcagcaacgccttggaatctttccgcaccgggcgcatccccattctggtcgccaccaac
gtggccgcccgcgggctggacgtgcagggcgtcagccacgtgatccagctgggccttccc
gacagcatggagaccttcgtgcaccgctccggacgcaccgggcgggccggtcacgaaggc
agcaacctgttgctgctgacgccgcaggaatcgggacgcttcaagttcatgatccgcagc
tccgagatgaaggtcgaatggctgaaagtccccgacattcaggagatcagcgtcattcag
cgcgaacgccgcgaagaatcgctgctggagctcgttcccgcgccggagatccgcgcctgg
gccgagtcgctcctcgaacgcagcgacgacgccgcggatctggcggccaagctgctgtcg
gtcgtggtcaaggacatccccacgggttactccctgagggattcgctccagcgcgagctc
gaccagcgccgcgagcgcgccgccgcgcgccgtgaaggccgcgtcggttcccgcttcgac
ggcgaacggcgcggcatcggcgcggaacgcgcgcgctttcgcgggcaaggcctttccatc
cgcatcgccaagggacggaacgaccaggaatggtccgtggggcggatcttgggcgcgctg
tgcgcggcgctcggcgtcagccgcgacgagatcggcaacatcaaaatgcgcgactcgcac
accgaggtggagctgagtcccgcggcgatcgccagcctcgacgacggcggacggcggcgg
ctgatcgaccgcggcttgatctccggaggctccggcgaaccccagccccgcttgggcggc
ccgcgccgcgagcgccgcttcgatcgttccggcgaacgtctcggcaaaaggaatttcgag
cgcgcttcggagcgccgtcctcgatacgggcgcgacgcttaa
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