Pyramidobacter sp. YE332: RAH42_11240
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Entry
RAH42_11240 CDS
T09677
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pyy
Pyramidobacter sp. YE332
Pathway
pyy03410
Base excision repair
pyy03430
Mismatch repair
pyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RAH42_11240
03430 Mismatch repair
RAH42_11240
03440 Homologous recombination
RAH42_11240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyy03400
]
RAH42_11240
DNA repair and recombination proteins [BR:
pyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RAH42_11240
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RAH42_11240
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAH42_11240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WOL39697
LinkDB
All DBs
Position
complement(2376997..2378655)
Genome browser
AA seq
552 aa
AA seq
DB search
MCSFNDLDIYQPGEKTRDLARRLECSELAAAVLDSRAAGEEQFRQLLNVPDLRRQLDELF
LGRAAPAARELWLKAVPGKRVFVYGDYDVDGVSSTVIALELAQQSGASEAVYYIPDRRSE
GYGLHPANMRRIIADGFDTLIVTDCGSKDVEAVEMARTAGMNVLIFDHHAVEGDIVRLES
LVNPQMDGDAEAKRLCATAVLWCWAWQAHILPESRLAGMLQLAALATVSDCMPLGPLNRS
LTREGIKMMRRAPRRGLRELLRSLCPNEPDSMIDENRLSMKVIPCLNAAGRVQVADVAVN
VLSGLGTPLELQRSVDQLLDLNRRRRDISAAICSSINAGLEQGERSQVLFNGSWPVGILS
AIASRLCSEHNKAFALAAPSGGGIRGTLRVPSGANAVELLKSLDDLLDAWGGHKSAAGFS
VDQLKWPRLERELNSLLQNIKVEKTPEEVIEFEPDRITGAAWDEVQRIGPFGNGNPLPAF
FVPLDSRTTYAPLGKRGLHTRVLFGGNALIAFNGAEQIERTEDIRGWLYRPRPNLWQGRV
SLQYIVEGIVVA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgtgttcgttcaatgatttggatatttaccagcccggcgagaagacccgcgatctcgcc
cgccggctggaatgttccgagctggccgccgcggtgctggacagccgcgcggcgggcgag
gaacaattccggcagctgctgaacgtccccgatcttcgccggcagttggacgagcttttt
ctcggacgcgcggccccggcggcgcgggagctgtggctgaaggcggtgcccggaaaaaga
gttttcgtttacggagactacgacgtggacggcgtctcgtccacggtgatcgcgcttgaa
ctggcgcagcagagcggcgcgtccgaggcggtctattacatccccgaccgccgttccgaa
ggttacggcctgcatcctgcgaacatgcgccgcatcatcgccgacggtttcgacacgctg
atcgtgacggactgcggttcgaaggacgtggaagccgtagagatggcgcgcaccgccggg
atgaacgtgttgatcttcgaccaccatgccgtggaaggcgacatcgtccggctcgaatca
ttggtcaatccccagatggacggcgacgccgaagccaaacggctttgcgcgacagccgtt
ttgtggtgttgggcctggcaggcgcatattttgcccgaaagccgcctggccggcatgctt
cagctggccgcgctggctacggtgtccgactgcatgccgctggggccgctgaaccgctcg
ctgacgcgcgaaggcatcaagatgatgcgccgcgctccgcgccgcgggctgcgcgaactg
ctccgctccctgtgcccgaacgaacccgactcgatgatcgacgaaaatcgtctgtccatg
aaggtgatcccctgcctcaacgccgccgggcgcgtgcaggtggccgacgtcgcggtcaac
gtgctctccggattgggaacgccgctggaactgcagcgcagcgtcgatcagctgctggat
ctcaaccgccgccgccgcgatatttccgcggcgatctgctcgagcatcaacgccggtctg
gagcagggcgagcggtcgcaggtcctgttcaacggcagctggccggtggggatcttgagc
gcgatcgccagccgtctgtgcagcgaacacaacaaggccttcgcgctggccgcgccgtcg
ggcggcggcatccgcggcaccctgcgcgtgcccagcggcgccaacgcggtggaactgctg
aaaagcctcgacgatctgctcgacgcctggggcgggcacaaaagcgccgcggggttctcc
gtcgatcagctcaagtggccccgcctggagcgggagctgaacagtctgcttcagaatatc
aaagttgaaaaaacgcccgaagaggtgatcgagttcgaacccgatcggatcaccggcgcg
gcatgggacgaggtgcagcgcatcgggccctttggcaacggcaaccctctgccggccttt
ttcgtgccgctggattcccgcacgacatatgcgccgttgggcaagcgcggcctgcatacc
cgcgtgctttttggcggcaacgcgctgatcgccttcaacggcgccgagcagatcgaacgc
acggaagatatccgcggttggctctaccgtccccgtccgaatctctggcaggggcgcgtc
agcctgcagtacatcgttgaaggcattgtcgtggcctga
DBGET
integrated database retrieval system