Pseudomonas ogarae SWRI108: HU749_000270
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Entry
HU749_000270 CDS
T07889
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza02025
Biofilm formation - Pseudomonas aeruginosa
pza03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HU749_000270 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HU749_000270 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pza02044
]
HU749_000270 (tssM)
Secretion system [BR:
pza02044
]
Type VI secretion system
Imp/Vas secretion system core components
HU749_000270 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
T7_gp14
Bax1-I
AAA_10
Motif
Other DBs
NCBI-ProteinID:
QXH94866
LinkDB
All DBs
Position
complement(56900..60400)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKAFFSFMTRWVIPLLGLIALSLIIWFVGPLLDWLVPEGRRWALIILVFAVWIAYRVLRI
IQARRQAAEVMRSLAAQTPPDPTSIATAEELETLRQRMDEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSDATIDKAAWLGFLGLLKKQRARRPIDGAFIAISLSDLLLGSDAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEYFDTLSKEERAQVWGMTFALDDGKSSDSP
LAHLQSEFTGLEQRLNDRLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPN
AFEERVLLRGVYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIEKLFTAV
AFAERGLVGVDPKVERRRKWIARGVLASTVVLVLVVSTLWWVSYRANQAYIAQVDQKVAP
LGQTVQNLSPAQRDVLAVLPLLNAVKHLADDAPSWAEGLGLYQGDMLEAESGSVYRKLLI
AVFAPRLLTRIEEQLHSGGNSDFLYEGLKAYLMLADTEHYDADFIKAWIALDWDRSLPRD
LPAEQRQALTAHLQALFERRPPLARLDPRLVEDLRRQLQQLPVAQRVYDRIKRQKLPEGI
PDFRINEAAGRDAALVFSRKSGKPLGEPLSGFFTVKGYRQGFLLTSLSQTGTLAEEQWVL
GHEEADQQNVASLAADVRRLYFQDYLRQWDALLADIDFVPITSVAQAADVLRVISGPTSP
LKKLLVAVAKETDLQQDERLLAAQGTPVEGGVDKLKERLGSLLGQEQATQNAPAQSDDPI
TAHFAELNSIVSKSEGEPAVIDGLLADMNALYVQVSAMVGASGDALLGEAKNQAAAAATR
VSLNAERQPPLVQGLVKSVVNSTTNSMMGGVRNQLNAAWTSEVVNIYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSTPTWRWQPGAAQKLGIAPGVLQTFQ
RAATIRDAFFRSGGTQPMVRFELKPVAMDSTITQFLLDLDGQQLSYDHGPSRPTAMQWPN
PGSIGVVRISIMPPSSSGRSGITLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASAS
YELRANSAFNPFKSRVLSGFSLPERL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagttttatgacccgctgggtcatcccattgctggggctgatcgcc
ctgagcctgatcatctggttcgtgggcccgctgctcgattggctggtgcccgaaggccgc
cgctgggccttgatcatcctggtgttcgcggtatggatcgcctaccgggtgctgcgcatc
atccaggcgcgccgtcaggccgccgaagtgatgcgcagcctggccgcgcaaaccccaccg
gacccgaccagcatcgccaccgccgaagagctcgaaaccctgcgccagcgcatggacgaa
gccttggccctgctcaagaaagccaagctgggcggtgacgagcgccgtaatctctacgag
ctgccgtggtacgtgatcatcggcccgccgggttcgggcaagaccaccgcgctggtcaac
tccgggctgcatttcccactggccgcgcaactgggcgccggggccgtgcgcggtgtcggc
ggtacacgcaattgcgattggtggttcaccgaccaggcggtcctgctcgacaccgccggc
cgctacaccacccaggacagcgacgcgaccatcgacaaggccgcctggctgggcttcctt
ggcctgttgaaaaaacaacgggcccggcgcccgattgatggcgcgttcatcgccatcagc
ctgtccgacctgctgctgggcagcgacgccgagcgcgccgcccatgccgccgcaatccgg
ctgcggatccaggagctgtacacccaactgggcgtgcgcttcccgatctacctgatgctg
accaagctcgacctcgtgcccggattcatggagtatttcgataccctgagcaaggaagag
cgcgcccaggtctggggcatgaccttcgccctggacgatggcaagagcagcgacagcccg
ctggcgcacctgcaaagtgagttcaccggccttgagcagcgcctcaacgaccgcttggtg
gaacgcctgcaacaagagcgcgacccggcgcggcgcgatctgatctacggtttcccgcag
cagttcggcgccttgaaagattgcctgcaaagcttcctcgaaggcgtgttcaaacccaac
gccttcgaagagcgtgtgttgctgcgcggcgtgtatttcaccagtggcacccaggaaggc
agcccgatcgatcgcctgatcggctccatggcccagagcatgaacctggaccgtcagcac
ctggcgcgccagaccggcaccgggcgcagctacttcatcgaaaaactcttcaccgccgtg
gccttcgccgagcgcgggctggtgggtgttgatccgaaagtcgagcgacggcgcaagtgg
atcgcccgcggcgttctggcctccaccgtggtgctggtgttggttgtcagcacgttgtgg
tgggtcagctaccgcgccaaccaggcctacattgcccaggtcgaccagaaggtcgcgcca
ttggggcaaaccgtgcagaacctcagcccggcgcaacgcgacgtcctcgccgtgttgccg
ttgctcaacgccgtgaagcacctggctgacgacgcaccgagctgggccgaaggcctgggc
ctgtaccagggcgacatgctcgaagccgagtctggcagtgtctatcgcaagctgctgatc
gcggtgttcgcgccacgcttgctgacgcgcatcgaagagcaactgcacagcggcggcaat
tcggatttcctctacgaaggcttgaaggcctacctgatgctcgccgacaccgagcattac
gatgccgacttcatcaaggcctggatcgccctggattgggatcgcagcctgccgcgggat
ttgccggccgagcagcgccaggccctgaccgcgcatttgcaggcgctgttcgagcggcgt
ccgcccctcgcgcgcctcgacccacgcctggtcgaagacctgcgccgccagttgcagcaa
ttgccggtggcccagcgggtctatgaccgcatcaagcgccagaaactgcccgaaggtatc
ccggacttccgcatcaacgaagccgccgggcgtgatgcggcgctggtgttcagccgcaag
agcggcaagccattgggcgagccgctgagcgggttcttcaccgtcaagggctatcgccag
ggcttcctgctcaccagcctgagccagaccggcactctggccgaagagcaatgggtgctg
ggccacgaagaggccgatcagcagaacgtcgccagcctggccgccgatgtgcgtcgcctg
tacttccaggactacctgcgccaatgggacgccttgctggccgacatcgactttgtgccg
atcaccagcgtggcccaggccgccgatgtgctgcgggtgatttccggcccgacctcgccg
ttgaaaaaactgctggtggcggtggcgaaggaaaccgacctgcaacaggatgaacgcctg
ctggccgcccaaggtacgccggtagaaggcggtgtggacaagctcaaggaacgcctgggc
agcttgctcggccaggagcaggcgacgcaaaacgcaccggcgcaaagcgatgacccgatc
accgcgcacttcgccgagctcaacagcatcgtcagcaaaagcgaaggcgagccggcggtc
atcgacggtctgctggcggacatgaacgccctgtacgtgcaggtcagcgccatggtcggt
gccagtggcgacgccttgctcggcgaagccaagaaccaggcagcagccgccgctacgcgc
gtcagccttaatgccgaacgccagccgccgctggtgcagggcctggtcaagtcggtggtc
aactccaccaccaacagcatgatgggcggggtgcgcaaccaactgaacgccgcctggacc
agcgaagtggtgaacatctatcgccagtccctggccgggcgctatccgatgtcgccaggc
agtgcgcgggacgcgaccctggatgacttcggccagttcttcggcgtcggcggggtgatg
gacaactacttccgcaagtacctgcaaccctacgtcgacacctcgaccccgacctggcgc
tggcagccgggcgcggcgcagaagctcggcatcgcccctggcgtgctgcagaccttccag
cgcgcggcgaccatccgcgatgcgttcttccgttccggcggcacgcagccgatggtccgt
ttcgagctcaagccggtggcgatggactcgaccatcacccagttcctgctcgacctcgac
ggccagcaactgagctacgaccacggcccaagccgcccgaccgccatgcagtggccgaac
ccgggcagcatcggcgtggtgcggatctcgatcatgccaccgtcgtccagcggtcgctcc
ggcatcaccctggatgggccgtgggcctggttccggctgctggagcaatcggacctgacc
gccggcaactcgccggaccgcttcaacctgcggctgcgggtcgatggcgccagcgcctct
tatgagctgcgggccaacagcgccttcaacccattcaagagccgggtgctcagcggcttc
agcctgccggagcggctatga
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