KEGG   Pseudomonas ogarae SWRI108: HU749_000440
Entry
HU749_000440      CDS       T07889                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pza  Pseudomonas ogarae SWRI108
Brite
KEGG Orthology (KO) [BR:pza00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pza03000]
    HU749_000440
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pza02044]
    HU749_000440
Transcription factors [BR:pza03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    HU749_000440
Secretion system [BR:pza02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   HU749_000440
SSDB
Motif
Pfam: Sigma54_activat AAA_lid_14 Sigma54_activ_2 HTH_8 AAA_5 HTH_30 AAA_2 AAA_16 AAA_7 HTH_50 wHTH-HSP90_Na-assoc
Other DBs
NCBI-ProteinID: QXH94900
LinkDB
Position
complement(101769..103286)
AA seq 505 aa
MFKKLSQPLDYAEALLAQFSDLSRLADGAELVGKFIQGVARLSGCELVQLYLLDATRTRL
EMNTECLEGQLQFRDPKSLPSDYHSEQLLQFSLCQNRVVCLDALSDSVHETGFLPPRARP
WQSLLCVPLGDPQDGVGGLLLCASNQHLDLHGIAESLGHLGTFALGQMHLLQRLRGPVDE
SEPDTTSLPSAVSYGLIGKSMAMRKTCSLLSKVLHSPYTVLLRGETGTGKEVVARVLHDY
GPRRSKAFIVQNCAAVPENLLESELFGYRKGAFTGADRDRAGLFDAANGGTLLLDEIGDM
PLSLQAKLLRVLQEGEIRPLGSNVTHHVDVRIIAATHRDLKQLMEEGKFREDLYYRLAQF
PIPLPALRQRDGDIIELARNFADKACTLLQRDPVRWSDAALDHLAAYDFPGNVRELKSIV
ERAVLLCEGGELLVEHFALHIQTPAERGRVSLRERMEQIERGLLIDGLRESSGNKARAAR
ELGLPLRTLVYRLARLNVQRSDFND
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgttcaagaaactctcgcaaccgttggactatgccgaagcgcttctggcgcagttttcc
gacctttcacgtttggcggacggtgctgagctggtggggaagttcatccagggcgtagcg
cggctcagtggctgtgaactggtgcagttgtacctgctcgatgccactcgcacccgcctg
gaaatgaacaccgagtgcctggaaggccagttgcaatttcgtgacccgaaaagcctgccc
tccgactaccactccgagcaattgttgcaattttccctgtgccagaaccgtgtggtgtgc
ctcgacgcgttaagcgacagcgtgcacgaaaccggtttcctgccgccgcgggccagaccc
tggcagtcgctgctttgcgttcccctgggcgatccgcaggatggggtcggaggcttgttg
ctatgcgcgagcaatcagcacctcgacctgcatggtatcgctgagtccctggggcatctt
gggaccttcgcgcttggtcagatgcatctgttacagcgcctgcgcggtcctgttgatgag
tcagagcctgataccacaagcctgccgagcgccgtcagttacggcctgattggcaagagc
atggccatgcgcaagacctgctcattgctcagtaaagtactgcacagcccctataccgtc
ctgctgcggggtgagaccggtaccggcaaggaggtggtggcccgggtcctccatgattac
ggcccgcgtcgatccaaggcgtttatcgtgcagaactgtgcggcggttcccgagaacttg
ttggagagtgagcttttcggctatcgcaagggcgcgttcaccggtgccgaccgggaccgc
gccgggctgttcgacgcggccaacggcggcacgctgttgctcgacgagatcggtgatatg
ccgttatccctgcaggccaagttgttgcgagtgttgcaggaaggcgaaatccggccgttg
gggtccaacgtcactcaccatgtcgacgtgcgcatcatcgccgccacccaccgcgacctg
aagcaactgatggaggagggcaagttccgcgaagacctgtattaccgccttgcgcagttt
ccaattccgctaccggcgttgcgccagcgcgacggcgacatcattgagctggcgcggaat
tttgccgacaaggcttgcacactcctgcagcgtgatccggtgcgctggtcagacgcagcg
ctcgatcacctggctgcctacgacttcccgggaaacgtccgtgaactcaagagcatcgta
gaaagggccgtgctcttgtgcgagggcggcgaactgcttgtcgagcattttgcactacac
atccagaccccagccgaacggggccgcgtgagcctgcgtgaacggatggagcagatcgaa
cgtggcctgctgatcgatggcctgcgtgagagttcgggcaacaaggcgcgtgccgcccgt
gaacttggcttgccgctacgcacgctggtctatcgccttgcgcgcctgaacgttcagcgt
agtgatttcaatgattga

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