Pseudomonas ogarae SWRI108: HU749_003805
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Entry
HU749_003805 CDS
T07889
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU749_003805 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_003805 (rnr)
03016 Transfer RNA biogenesis [BR:
pza03016
]
HU749_003805 (rnr)
Enzymes [BR:
pza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HU749_003805 (rnr)
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU749_003805 (rnr)
Transfer RNA biogenesis [BR:
pza03016
]
Prokaryotic type
tRNA degradation factors
HU749_003805 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXH95531
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All DBs
Position
889423..892059
Genome browser
AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRTEYAGVVP
HLKQLYSLYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAGLEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAEAPTGRKKRGNETAAPATKGKGKGAPAK
TAEPEPARAGRRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGK
SHGAEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgcgagcagttggtcgaagagttcggtctgaccaccgaggaccaactcgaagccctgcgc
cgccgtctgcgcgccatggagcgcgacgctcaactgatctacacccggcgcggcacctat
gcgccggtggacaagcttgacttgatcctgggtcgcatcgccggccaccgtgatggcttc
ggtttcctgatcccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgggcgctggcccgcgtgtctggcctggaccgccgcggtcgt
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaatccatcgtcggccgttac
ttcgaagaaggcggtatcggttttgttgtgccggataacccgaaggtccagcaggaagtg
ctgattaccccgggccgtaatggcgccgccaaggtgggtcagttcgtcgaggtgaaaatc
acccactggccaactgcgcgcttccagccgcagggcgatatcgttgaagtggtcggcaac
tacatggcgccgggaatggaaatcgacgttgcgctgcgcacctacgacattcctcacgtc
tggcccgaggctgtgctcaaggaagccgccaagctcaagccggaagttgaagagaaagat
aaagaaaaacgcatcgacctgcgccatctgccgttcgtcaccatcgacggtgaagacgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggctggaagttgttcgtcgcgattgccgacgtgtccagctacgtgaagatcggttcg
gccctggataacgaagcccaggtgcgcggcaactccgtgtatttccctgagcgcgtgatc
ccgatgctgcctgagcagctgtccaacggcctgtgctcgctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctccaaaaccggcgaaatgaccgactaccagttc
tacgaagcggtgatccactcccaggcgcgcctgacctacaacaaggtcagcaccatcctg
gaaacgccgaagaccagtgaagccaaggccctgcgtaccgaatacgctggcgtggtgccg
cacctcaagcagctgtactcgctgtacaaggtgttgctgggggcccgtcacgtgcgtggc
gcgatcgatttcgagacccaggaaacccggattgtcttcggttccgagcgcaagatcgcc
gcaatcaccccgacgacccgtaacgatgcgcacaagctgatcgaagagtgcatgctggcg
gccaacgtggccaccgcggaattcctcaagaagcacgagattcctgcgttgtaccgcgtg
cacgacggcccgccgccggagcgtctggaaaaactgcgcgccttcctcggcgagctcggc
ctgtccctgcacaaaggcaaggacggcccgacgccgaaggactaccaggcactgctggcc
agcatcaaggaccgtccggattaccatgtgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgccgacaaccagggccactttggcctgaattacgaggcgtacacc
cacttcacctcgccgattcgccgttatccggacctgctcacgcaccgcgcgatccgcagc
gtgatccattccaagcagaacaccccgcacgtcaagcgcgccggtgccatgactattccg
aaggcacggatctatccgtacgacgaggcgggcctggaacagttgggcgagcagtgctcc
atgagcgagcgccgcgccgacgaagctacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtgggcgagtcgttccctggcgtgatcactgcggtgaccggcttt
ggtttgtttgtcgaactgaccgacatttacgtcgagggcttggtgcacgtcaccgccttg
ccgggtgattactaccactttgatcctgtgcaccaccgcctggcgggcgaacgcaccggt
cgcagcttccgtctgggcgacaccgtggaagtgcaggtcatgcgcgtcgatctcgatgag
cgcaagatcgacttcggaatgtctgacaagcccgccgaagcaccgactggtcgtaaaaag
cgtggcaacgagaccgcagcgcctgcgaccaaaggtaaaggtaaaggtgctcctgcaaaa
accgcagagcctgagccagccagggctggtcgccgttcgtctgccaaggacaaggctccc
gaagcctaccgccccagcgacgcagcggcgaaaaacgccgaactgcgcaagagccgcgag
ttgaagcagcagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaag
tcccacggggcggaaaagccgtcgagcaagccaagtaaacaccgtaaaggcccgcccaaa
gcgggctcggcccccgccaaaagcggcgggtcgcgcaaacctaaggccaagtcatga
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