Pseudomonas ogarae SWRI108: HU749_004520
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Entry
HU749_004520 CDS
T07889
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HU749_004520 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_004520 (recB)
Enzymes [BR:
pza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HU749_004520 (recB)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU749_004520 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QXH95664
LinkDB
All DBs
Position
1060634..1064323
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AA seq
1229 aa
AA seq
DB search
MSRQTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGSASGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDEVPAPDSLIAALRDEFNADQWPGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSELLGEVLRDYWRLFCYSMQGE
ALNWVRTHWGGPAALLPRVRGLFSSERGDGDGLEPAELIAAALQERSAALLDLKAPWRQW
AVELLEICQQGVASKSVDGRKMQARYFEPWFQKITAWVDDESLELLDIGTGFSRLTPEGM
AEAWKGEVPNHPGLDAMASLKASLDALPTPDAAVLQHAAQWVGARFEAEKRRRAEMGFDD
MLLRLDAALQADGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNDPGTGLF
LIGDPKQAIYAFRGADIYTYLRAREATAGRLHTLGTNFRSSHAMVGAVNHVFQNAESRPK
GRGAFLFREPSGENPVPFLSVESQGRKESLQVAGQAVAALNIWHLSSEQPLSGAVYRQSM
AAACASEITALLNGGQSGRDGFTVDGDVLRGVRPADIAILVRDGKEAQAVRDALSARGVR
SVYLSDKDSVFASQEARDLLIWLRACAEPDAERPLRAALASITLNLSLTELERLNQDELA
WEARVMQFRGYRTVWRSQGVLPMLRRLLHDFELPQALMARSDGERVLTNLLHLCELLQQA
AGELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSTKPVDGSRLPLHYHDEANKAQISLKPTAELIAKADDERLAEDLRLLYVALTRAQHACW
LGVADLKRGSNNRSILHVSALGYLLGGGAPLTESVELRRWLEDLQQGSDAVSYQPMPEAT
DEHYRPPRNEAVLLEPLVPLRKASENWWIASYSALRISESLSEGSDTAPESPQAQKLFDD
ERLDPDAPRETVAVGGDIHRFPRGPNPGTFLHGLLEWAAGEGFSSAPADIEDAIARRCNR
RGWKGWITTLSDWLQHLIKMPMHVGNDQAPVVLEQLSRFQVEMEFWFASHKVDVQKLDQL
VCRFTHGGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGVDDMAYTVPAME
QSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRSASQGVYFTKPP
RALIEQLDRLFQGAPEPKAEPAWVQGELL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgacagacaccattggccctggctttcccgctacgtggcagccaactgatcgag
gccagcgccggtaccggcaagaccttcaccatctcggcgttgtacctgcgtctggtgctg
gggcatggcggttcggcgtccggctttggccgcgagttgcttccgccgcaaatcctggta
gtgaccttcacggatgccgccaccaaagagttgcgtgaacgaattcgcacccgtctggcc
gaagccgcgcgtttcttccgcgacgaagttcccgccccggactcgctgatcgctgcgttg
cgcgacgagttcaacgctgaccaatggcctggctgtgcgaaccggctggacatcgctgcg
cagtggatggacgaagcggccgtctcgaccatccacagttggtgccagcgcatgttgcgt
gagcacgccttcgacagcggtagcctgttcacccagaccctggaaaccgaccacagcgaa
ttgctgggcgaggtgctgcgcgattattggcggttgttctgctattcgatgcaaggcgag
gcgctgaactgggtgcgtacccattggggagggcctgctgcgctgttgccgcgggtacga
ggcttgttttccagcgagcgtggcgatggtgacgggcttgagcctgccgaactcatcgcc
gcggccttgcaggagcgcagtgccgccttgcttgatctcaaggcaccgtggcggcaatgg
gcggtggaactgttggagatctgccagcaaggcgtggccagcaagtctgtcgacgggcgc
aagatgcaggcgcgttacttcgaaccgtggtttcagaaaatcactgcctgggtcgatgac
gaaagccttgagctgttggacatcggcaccgggttctcgcggttgacgcccgagggcatg
gccgaagcctggaaaggtgaagtgcccaaccaccccgggttggacgccatggccagtctc
aaggccagcctggacgcgttgcccacaccagatgccgccgtgctgcagcatgccgcgcaa
tgggtcggggcgcgcttcgaggcagagaagcgtcgccgcgccgagatgggctttgatgac
atgctgctgcgtctcgatgcagccctgcaggccgacggaggcgagcgtctggcgagcctg
atccgcgagcagtttccggtggcgctgatcgatgagttccaggacaccgacccggttcaa
taccggatcttcgaaagcatctaccgtatcgaagacaacgaccccgggaccggacttttc
ctgatcggcgatccgaagcaggcgatctacgcttttcgcggtgccgacatctatacctat
ctgcgcgctcgcgaagccactgctggcaggctgcacacgctgggcacgaacttccgttcc
agccatgccatggtgggcgcggtaaaccatgttttccagaatgccgagtcccgcccgaag
gggcgcggggcctttctgttccgtgaaccttcgggcgagaacccggtgccgttcctgtcc
gttgagtcccaggggcgcaaggagtccttgcaggtcgctgggcaggcggtcgcggcgctg
aacatctggcacctgtcgtcggagcagccactttccggtgcggtgtatcgacaatccatg
gctgccgcctgcgccagtgagatcacggcgttgctcaacggcggccagtcgggacgcgac
ggcttcacggtcgatggagacgtgctgcgaggcgtgcgtccggcagatatcgccatcctg
gtgcgcgatggtaaagaagcgcaggcggtgcgagacgcgttgtccgcgcgaggcgtgcgc
agtgtctatctgtccgacaaggattcggtctttgcctcgcaggaagcgcgggacttgctg
atctggctcagggcctgtgccgagccggatgccgaacgaccgctacgggcggccctggcc
agcatcacgttgaacctatcgctgacggaactggaacgactcaaccaggatgagctggcc
tgggaagcgcgggtcatgcaatttcgcggttatcgtacggtctggcgcagccagggcgtg
ctgccgatgctgcggcgcctgctgcatgatttcgaactgccccaggccttgatggcgcgc
agcgatggcgagcgggtgctgaccaacttgttgcacctttgcgaactgttgcagcaggca
gccggtgaactggatggcgagcaagccttgatccggcatttgtccgagcacctggccttg
tccgggcaagcgggcgaagagcagatcctgcgtctggaaagcgatgagcaactggtcaag
gtggtcacgatccacaagtccaaggggcttgaatatccattggtcttcttgcccttcatc
tgttcgacgaaaccggtggacggcagtcgattgccattgcattaccacgatgaggccaac
aaggcgcagatcagcctaaaacccactgccgaattgatcgccaaggccgatgacgagcgt
ctggccgaggatctgcggcttctctacgtggccctgacccgcgcgcaacatgcctgctgg
ctaggtgtcgcggatctcaagcggggcagcaacaaccgctcgatcctccatgtgtccgcg
ctagggtatctattgggcggtggtgcaccgctgaccgagtcggtggagttgaggcgttgg
ctggaagacctgcagcaaggcagtgacgcggtgagctaccagccaatgcctgaggccacc
gacgagcactaccggcccccgcgcaacgaagccgtgttgcttgaacccttggtgcccttg
cgaaaagccagcgagaactggtggatcgcgtcctacagtgccttgcgcatcagcgaaagc
ctgagcgaaggcagcgataccgcgccagagagtccccaggcccagaaactgttcgacgat
gaacgactggacccggacgctcccagggagaccgtcgctgtcggtggcgacatccaccgc
tttccccgtggccccaaccccggcactttcctgcatggcctgctggagtgggccgccggg
gagggcttttcatcggcaccagcggatatcgaggatgccattgcccgacgctgcaatcgc
cgaggctggaaaggctggatcaccacgctgagcgattggctgcagcacctgatcaagatg
cccatgcatgtcggcaacgaccaggcgccagtggtgctcgaacaactgagccgattccag
gtggagatggagttctggttcgccagccacaaggtcgatgtgcaaaagctcgaccagctg
gtttgccggttcacccatggcggtgtggcccgcgtcgcggcagaaccggtgctgctcaac
ggcatgttcaagggcttcatcgatttgacgttcgagcacgacggtcggtactacgtggcc
gattacaaatccaactggctgggtgtcgatgacatggcctacaccgtaccggccatggaa
cagtcgatcctggaccatcgctacgacctgcaatacgtgctgtacctgttggccctgcat
cgccagctcaaggcacggctccccgattacgactacgatcggcatgtcggcggcgcgttg
tacctgttccttcgcggaacccgctcagccagtcagggggtgtatttcaccaagccgcca
cgggcattgatcgaacaactggatcgcctgttccagggggcgcccgaacccaaggccgag
ccggcgtgggtacagggggaattgctatga
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integrated database retrieval system
