Pseudomonas ogarae SWRI108: HU749_005200
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Entry
HU749_005200 CDS
T07889
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU749_005200 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_005200 (pnp)
03016 Transfer RNA biogenesis [BR:
pza03016
]
HU749_005200 (pnp)
Enzymes [BR:
pza01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HU749_005200 (pnp)
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HU749_005200 (pnp)
Transfer RNA biogenesis [BR:
pza03016
]
Prokaryotic type
tRNA degradation factors
HU749_005200 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QXH95782
LinkDB
All DBs
Position
1226727..1228832
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEA
TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKSPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtgctggtcaccgttgacgacgacgtcagcgta
ttggtgaccgttgtcggtgccaagcaagccgatccaggcaagggcttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtgtccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactgaaggcctcgagcctggacatggtcgtg
gccggtacttccgaagccgtgctgatggttgaatccgaagccaaagagctgaccgaagac
cagatgctgggcgccgtgttgttcgcccacgacgagttccaggtggtgatcaacgccgtc
aaggaactggccgccgaagctgccaagccaacctggacctgggctccgcaagccgaagcc
accgagctgctgggcgcgatccgtgccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgcacgcctgggcgagctgaaggaccaggtcgttgcc
aagctgtccggcgaagaaggccagccatcggccagcgacgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggtcgc
gacacccgtaccgtacgtccgctgaacatcgaagtcggcgttctgccaaagacccacggt
tcggcactgttcacccgtggcgaaacccaggcgctggtcgttgcaacactgggcaccgcc
cgtgacgcgcaactgctggacaccctggaaggcgaaaagaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgccgc
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgcctgccgctgac
gtgttcccgtacaccattcgtgtggtatcggaaatcaccgagtccaacggttcgagctcg
atggcttcggtctgcggcgcttccctggccctgatggacgccggtgtgccgatgaagtcg
ccggttgccggtatcgccatgggtctggttaaagagggcgagaaattcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtggccggtaccgcc
aaaggcgtcaccgcactgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaggccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcatcggtcagtcccgtaccgaactgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagaaaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagcggcagaagcagcacgccagcgcgtcctgggtatcaccgcagaagcc
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcgttcgtc
aacatcctgccaggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacatcctcaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggtcgtatcaaactgtccatcaaggacgtcgcagcagccaaggcatcgggc
gtttaa
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