Pseudomonas ogarae SWRI108: HU749_006635
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Entry
HU749_006635 CDS
T07889
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03030
DNA replication
pza03430
Mismatch repair
pza03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU749_006635 (dnaE)
03430 Mismatch repair
HU749_006635 (dnaE)
03440 Homologous recombination
HU749_006635 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pza03032
]
HU749_006635 (dnaE)
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_006635 (dnaE)
Enzymes [BR:
pza01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HU749_006635 (dnaE)
DNA replication proteins [BR:
pza03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HU749_006635 (dnaE)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HU749_006635 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
QXH96058
LinkDB
All DBs
Position
1542027..1545548
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRTNRPNDEEH
LHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSNQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EDRLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFQDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGELFKRHRGACPITMEYVRPDAKAV
LQFGEGWRIDPADALIQALRDQFGKDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatactccctggtcgacggtctg
gtgcggatcaagcccctggtcaagaccctggtgggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgttcgctggtcaagttctacaaggccgccatgggcgccggg
atcaagccgatctgtggcgccgacctgtggctgtcgaacaaggacccggacgctccgctg
agccgtatcagcctgttggtgatgaacgccctgggttatcgcaacctcaccgagctgatc
tcccgtggttttatcgacggccagcgcaacggctcgatcatcatcgagcgcgagtgggtg
gccgaggccagcgaagggctgatcatgctgtcggcggccaaggaaggtgaaatcggcctg
gccctgctcagtggcaaccccgaggaagccgagaccctggcccgtgactggatgtcggtg
ttcccggaccgcttctatatcgaggtgcagcgcaccaatcgtcccaatgatgaagagcac
ctgcacgccgccgtggccctggccgacaagatcggcgcgccgctggtggcgaccaacgac
gtgcgctttatcaagcaggaagacttcgaagcccacgaaacccgtgtctgcatcggtgag
ggtcgggccctcgacgatccacggcggtcgaagaactacagtaaccagcaatacctcaag
agcgccgaggaaatggccgagttgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgaagtgaaactgggcaagcacttcctgcccaacttc
ccgatccccgatggcatgaccatcgacgaatattttcgcaaggtgtcttttgacggcctg
gaggatcgcctcagcgtcctgctgcccaaggacaccaccgaagattacgaagccaagcgc
caggtctatgtcgaccggttgaatttcgagctggatatcatcatccagatgggctttccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtg
ggcccaggccgtgggtcgggtgccgggtcgctggtggcctacgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttcctcaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgactacgtg
gccgagaaatatggccgcaacgccgtgagccagatcatcaccttcggttccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcttggcggatcgt
ctgtcgaagatgattccgttcgaagtcggcatgaccctggagaaggcctacgagcaggaa
gaaattctgcgggacttcatcaaggtcgacgaagaagctgcggaaatctgggagatggcc
cgcaagcttgaaggcgtggtgcgtaacgtcggcaagcacgccgggggcgtggtgatcgcg
ccgaccaaactgactgacttctcgccgatctattgcgacgaagaaggcgacggcctggta
acccagttcgacaaggatgacgtcgaggcggcgggcctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcgactgggcgctgaaaaccatcaaccgggaccgggccaag
gtcggcgaagaaccgctcgacattgccttcatcccgctggatgacaagccgacctacagc
ctgctgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttc
cgtccgggccctttgcaatcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgagctggcctacccgcactcggactatcagtacgaaggcttgaaaccggtgctggca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
ggttataccctcggcggcgcggacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcaacgcggcggtttcattgagggttgcgcgaccaacggcatcgaccct
gacctggccggtaacattttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagaccgcgtggctgaaggcccattac
ccggcgccgttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagctgcgcctcgacgcaccggatgtgaacgct
tcggagttcaagttcacggtgaacgacgaaggccgcatcatctatggcctgggcgcgatc
aagggcgtgggcgaggggccggtggaagccatcaccgaagcgcgccaggacgggccgttc
aaggacctgttcgatttctgcgcccgggttgacctcaagcgcatcaacaagcgcaccctc
gacggtttgatccgcagtggtgccctggaccggctggggccttacttccaggatgagccc
aaggcctaccaggccaacatcgaccgcaaccgcgcggtgttgctggcggcgatggaggag
gcgatcaaggccgccgaacagactgcccgtacccatgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaagacgccgatgtctatggcaaccatcgcaaggccaaggag
ctgaccctcaaggagcgcctcaagggtgagaaagacaccttgggcctgtacctcaccggt
cacccgatcgacgaatacgaaggtgagatccgccgcttcgcccgtcagcgcattatcgac
ctcaagccggcgcgcgacacgcaaaccgtcgctggcatgatcatcgccctgcgggtgatg
aagaacaaaaaaggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgcatc
gaggcctcattgttcgccgatgcgttccactcggcgcagtcgctgttgcagaccgatgcg
atggtggtggtggaaggcgaggtcagcaacgatgacttttccggtggcctgcggctgcgg
gtcaagcgggtgatgagcatggaagatgctcgtaccaacctggctgaaagcctgcgcctg
aagctgcagacccaggatctcaagggcgatcagctacgctggttgggtgaattgttcaag
cgccatcgcggtgcctgcccgatcaccatggagtatgtacgccccgacgccaaggctgtg
ttgcagttcggcgaaggctggcgaatcgatccggcggatgcgttgattcaagccttgcgt
gaccagttcggcaaagacaacgtcttcctccaataccgttga
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