Pseudomonas ogarae SWRI108: HU749_008550
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Entry
HU749_008550 CDS
T07889
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pza
Pseudomonas ogarae SWRI108
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_008550 (hrpA)
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU749_008550 (hrpA)
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU749_008550 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_25
AAA_22
nSTAND3
NACHT
T2SSE
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QXH96425
LinkDB
All DBs
Position
1908715..1912626
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDKLLKNLDHAMLADRNRLRRQLFELRKKPDEAKLAQWVTRMQASCDQVLARK
ASLPVIRYDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSANTRLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL
AESAKFLRGKLPGLTELGLLYRDLGRIDSLVEDILLTSLDSCVLEGEASLPRDGAALASL
AERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGQVEG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcccccgctatcgacaagctgctgaaaaacctcgaccacgccatgctc
gccgaccgtaaccggttgcggcgccagttgttcgagctgcgcaagaagcccgacgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcgtgcgatcaggttctggcgcgcaag
gcgagcctgccggtgatccgctacgacgacaatttgccgattgccgccaagcgcgacgaa
atcaaggacgcgctgctcaagcaccaggtgctgatcattgccggcgaaaccggctcgggg
aaaaccacgcagttgccgaagatctgcctggaaatcggtcgcggccagcacggcttgatc
ggccacacccaaccgcgccggatcgccgcgcgcagtgtggcgagccgggtggccgaggaa
ctggccacgccgttgggggcgctggtgggctatcaggtgcggttcgaggaccagagcgac
gccaacaccctgatcaagctgatgaccgacggcatcctgctggccgagacccagaacgac
cgctacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctgggttacctcaagaccctgctgccacgccgtccggacctgaaagtc
atcatcacctcggcgaccatcgacctggagcgcttctccaagcatttcgatgacgcgccg
atcgtggaagtctcgggccgcaccttcccggtggaaacctggtatcgcccgctgaccctg
gagcaggacgaggagggcaaccgggtcgaagacgacttgaccgtcgaccaggcgatcctc
gccaccctcgatgagatcgccgcctacgagcgcagcgagcggcgcagccctggggatgtg
ctggtgttcctgccgggcgagcgggaaattcgcgacgccgcggagatgctgcgcaaggcc
cagctcaagcacaccgagattctgccgctgtatgcgcgactgtcgccggccgaacagcag
cgcatcttccagtctcacccgggccgtcgtgtggtgctggcgaccaacgtcgccgaaacc
tcgctgaccgtgccgggaatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctatcgggccaaggtccagcgcctgcccatcgaagccatttcccaggccagtgcc
aaccagcgcaagggccgctgcgggcgggtcgagccggggatttgtgtgcggttgtacagc
gaggaagattttcttggacggccggagttcactgacccggagatcctgcgcactaacctg
gcggcggtgatcctgcagatgctgcacctgcgcctcggcgagatcaccgatttcccgttc
atcgagccgccggacggcaaggccatcagtgacggtttcaacctgctgcaagaattgtcg
gcggtggaccgcaacagccagttgaccccgctcggtcgccagttggcgcgcttgccggtg
gacccgcgcatgggccgcatgctgttggaagcggcgaagctgggcagtttgcaggaagtg
ttgatcgtcgccagtgccatgtcgatccaggacccccgcgagcgtccgccggagcgccaa
caggcggcggaccaggcccatgcccagtggaaggacgcggattcggacttcgccgggctg
gtcaacctgtggcgcggtttcgaagagcagcgccaggccctgaccgccagcccgctgcgc
aattggtgccgcaagaacttcctcaattacctgcgcctgcgcgagtggcgtgattcccat
cggcagttgagcttgatctgccgtgacatgcagttgagcctcaacaaagaaccggctgat
ttcccgaaactgcacaaagcggtgctctcgggcctgttgagccagatcggccagaaaacc
gaagacggcgactacctgggcgctcgccagcggcggttctgggtccacccctcgtcgggc
ctgggcaagaagcgtccgcaatggctgatgaccgccgagttggtggaaaccaccaagctg
tatgcgcgcatggtggccaagatcgaaccggactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcgggcaggtggtggcctat
gagcaaatcaccctgttcgggctcatcgtcgttggtcggcgaccggtgcattacgggccg
gtggacccggtggtttcccgtgaattgttcatccgcgaggcattggtgcgcggcgagatc
cagtccaaggccaagtgcctgagcgccaatacccggttgctggagcaactcgacgagctg
gaagccaaggcccgccgccgcgatattctggcggacgaggaaaccctgtttgccttctac
gacgcgcgcttgccggccgagatccaccagaccgcgacattcgacagctggtaccggatc
aacagccagaaagacccgcaactgctgatcatgcgcgaagaagacgtgttggcccgcgaa
gccagcgaagtcaccgccgcgcattaccccgacaccttgcgcgtcggcgacctgaccttg
ccgctgagctatcacttcgagcccaaccacccgcgcgacggcgtgacgttgcgagtgccg
gcgccactgctgccgatgctgccgccggaacgcctggaatggctggtgccgggggtgatc
gaggccaagtgcatcgccctggtgcgcaacctgcccaaggccttgcgcaagaatttcgtg
ccggtgccggatttcgtcaaggcggcgctgcaacgcatcaccttcgccgagggctcgttg
ccgcagtccctgggccgtgaattgctgcgcatgacgggcgcgcgggtcagtgacgaagcc
tgggccgaagccgcccagcaggtggaaagccacctgcgcatgaacctggaaatcgtcgac
ggccagggcaagttccttggcgaaggccgcgacctggccgagttgacggcgcgttttgcc
gaagccagccaggcggccttggccgtaccgcaaacggcgaaaagccaggcaccggtggag
gcgaaggtcttcgcgccggtggccgagaaaacccaacagaagatcgccgggctgtcgatg
acggtctacccggcgctggtggaagagggcggcgtggtcaaggaagggcgtttcccgacg
ccggccgaagccgagttccagcatcgccgggccttgcagcgcttgctgatgcagcaattg
gccgagtcggccaagttcctgcgcggcaagctgccggggctgacggagctgggcctgctg
taccgcgacttgggccgcatcgacagcctggtggaagacatcctgcttaccagcctcgac
agttgtgtgctcgaaggcgaagcgagcctgccccgtgacggcgccgcactggcctccctg
gccgagcgcaagcgcggcggctggaccgagcacgccgaacgcctggcgaagctgaccctg
gacatcctcaagctctggcatggcctgcaaaaacgcttcaagggcaagatcgatctggcc
caggccgtggcgctgaacgatatcaagcagcaactcagccacctggtctacccgggcttc
gtccgcgaaaccccacatcagtggctcaaggaactgccgcgctacctcaaggccatcgag
caacgcttcgagaagctcggtagccaggtgcagaaagaccgggtctggagcggcgagttg
tcgaacctctgggcccaataccaggcccgcgccagcaaacacgcccaggaaggcaagcgt
gatccgcaactggagctgtaccgctggtggctggaggaataccgggtgtcgctgttcgcc
cagcaactggggaccaaggtgccgatctcggacaagcgcctgggcaagcagtgggggcag
gtggagggttga
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integrated database retrieval system
