Pseudomonas ogarae SWRI108: HU749_009730
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Entry
HU749_009730 CDS
T07889
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU749_009730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_009730
03009 Ribosome biogenesis [BR:
pza03009
]
HU749_009730
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU749_009730
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU749_009730
Ribosome biogenesis [BR:
pza03009
]
Prokaryotic type
rRNA helicases
HU749_009730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QXH96650
LinkDB
All DBs
Position
2169134..2170807
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaacccgaacattcttgctgcc
gtcactgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgctttcgaaacctattccaagcag
atgcctggcgttaccgttgtggccgtttacggcggtgccccgatgggcccacaactgaaa
gccatccgtaatggcgcgcagatcgttgtcgccacgccgggtcgtctgtgcgatcacctg
cgtcgtgacgaaaaagtcctggctaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggtttcatggatgacctggaagtcatcttcaaggccctgccagcgact
cgccagactgtattgttctcggccaccctgccgcaatcgatccgtgccattgccgagcgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacgtctgccgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtcgctgcccgtggcctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcgctgctgctggtcaccccgcgtgagcgtcgcatgttgcaagtgatc
gagcgtgtaactggccagaaggtggctgaagttcgcctgccggacgcccaggccgttctc
gatgctcgcatcaagaaactgaccaacagcttgtcgccactggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcaccccacgcgccctg
gctgccgcactgctgcgcaaggccaccaatggccaagcgctgaacctggctgcaatcgag
aaggaacgtcccctggtgccgaacaacgcaccgcgtggcgatcgtcctgagcgcaccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgctccgatcccgctggccgaaggtcgt
gctcgctgccgtaccgcgctgggtgcccgtgacggcatcgctgccaagaacctgctgggt
gccatcctcaacgaaggcggcctggcccgcgaagcgatcggccgcatccaggtgcgtgac
agcttcagcctggtagagctgccggaagatggtctggagaagttgctgaccaagttgaaa
gacactcgtgtggctggcaagcagctcaagctgcgtcgctatcgcgaagattga
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