Pseudomonas ogarae SWRI108: HU749_015300
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Entry
HU749_015300 CDS
T07889
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU749_015300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_015300
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU749_015300
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HU749_015300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
SMC_N
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_16
AAA_25
RsgA_GTPase
MCR
Motif
Other DBs
NCBI-ProteinID:
QXH92246
LinkDB
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Position
complement(3528215..3530872)
Genome browser
AA seq
885 aa
AA seq
DB search
MPPRSAPASTADLPQGTGFVRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFST
LYAEAQRRYFESVAPYARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTL
SSLIRMLYSRAGSYPADQPMLYAEDFSPNTPQGACQQCHGLGRVYEVTEASMVPDPSLTI
RERAVAAWPMAWQGQNLRDILVTLGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGLTP
AQTRAALKRKLEPSYQGTFSGARRYLLHTFMHSQSAQMRKRVAQYMRASPCPVCEGKRLK
RQALTVTFAGLDIAELSHLPLLELAEVLKRVLAPNYLAQAEETGDVLSHQQTREAREQRA
ARGDNPHAGGPDARHTPNLSLEKRLAAQRIAAELLERITTLIDLGLGYLALERSTPTLSS
GELQRLRLATQLNSQLFGVIYVLDEPSAGLHPADSEALFGALQRLKAAGNSVFVVEHDLD
TMRRADWLIDVGPDAGEQGGKVLYSGPPAGLGQVPESRTRGYLFGEEHIAARSSRVPRDW
LRLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLDLVGAHLGQASPNAEPD
EQSLEDEPVQTSDGRVTAGLEAVKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATA
QAQALGFDAGRFSFNVAKGRCETCEGEGFVSVELLFMPSVYAPCPTCHGARYNPQTLAVS
WQGLDISQVLQLTVNQALEVFAEQAAARRSLQVLQDIGLGYLRLGQPATELSGGEAQRIK
LATELQRKARGATLYVLDEPTNGLHPQDVDRLLVQLNRLVEEGHTVVVVEHDMRVVAQSD
WVIDVGPGAGSQGGNVVACGAPEEVAACRESRTAEFLKRALQPGR
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgccgccacgctccgcccctgcttcaaccgccgacctgccgcaaggcaccggtttcgtc
cgggtgcgtggtgcccgcgaacacaacctcaagaacgtcgacgtggacatcccccgcgat
gcgctggtggtgtttaccggtgtgtcgggctccggcaagtcgtcgctggccttctccacg
ctctacgccgaagcccagcgtcgctacttcgagtccgtcgcaccctatgcgcggcgcctg
atcgaccaggtcggcgtgccggacgtggacagcatcgagggcctgccgccggcagtcgcc
ttgcagcaacagcgcggcacacccagcgcacgctcatcggtgggcagcgtcaccaccctg
tcgagcttgattcgcatgctctactcccgcgccggcagctacccggccgaccaaccgatg
ctctatgccgaagacttctcgcccaacacgccacagggtgcctgccagcaatgccatggc
ctgggccgggtctatgaggtgaccgaagcgtccatggtgccggacccgtcgctgaccatc
cgcgagcgcgccgtagccgcctggcccatggcttggcagggccagaacctgcgggacatc
ctggtgaccctgggctatgacgtcgacatcccctggcgcgacctgccgaaaaagcaaagg
gactggattctcttcaccgaagaaaccccgaccgttcccgtctacgcgggactgacgccg
gcccagacccgcgccgctctcaaacgcaagctcgaaccgagttaccagggcacgttcagc
ggcgcccgacgctacctgctgcacacattcatgcattcgcaaagcgcgcagatgcgcaaa
cgcgtggcgcaatacatgcgcgccagcccctgcccggtgtgcgagggcaagcgcctcaaa
cgccaggcgctgaccgtgacctttgccggcctggacatcgccgagttgtcgcacctgccg
ctgcttgaactggccgaggtgctcaagcgtgtcctggcgcccaactaccttgcacaggcc
gaagaaacaggggatgtcctcagccaccagcaaacccgagaggcccgtgagcaacgcgcc
gccaggggcgataatccccatgcgggcgggcccgacgcccgccacacgcccaacctctcc
ctggagaaacgcctggccgcccagcgcatcgccgccgagctgctggaacgaatcaccacc
ctcatcgacctgggcctcggctacctcgccctggagcgcagcactccgacgctttcgtcc
ggcgaactgcaacgcctgcgcctagcgacccagctcaattcccagttgttcggcgtgatc
tacgtgctggacgaaccctccgccggcctacacccggccgacagcgaagcgctgtttggc
gccctgcaacgcctcaaggcagcgggcaactcggtgtttgtggtcgaacatgaccttgat
accatgcgccgcgccgactggctcatcgacgtcggcccggacgccggcgaacaaggtgga
aaagtcctctacagcgggccgccggcaggccttggccaagtgcctgaatcacgcacccga
ggctacctctttggtgaagaacacattgcggcacgcagttcccgagtgcccagggattgg
ctgcgcctggaaggcatcacccgcaacaacctcgacaacctgagcgcggccttccccttg
ggctgcttcaccgccgtgaccggcatctccggctcaggcaaatccagcctcgtcagccag
gccctgctggatctggtcggcgcccacctgggccaggccagccccaacgccgaacccgat
gagcaaagcctggaagacgaacccgtgcaaaccagcgacgggcgcgttaccgccgggctc
gaggcggtcaagcggctggtgcaggtggaccagaaacccatcggccgcaccccgcgctcc
aacctcgccacctacaccgggctgttcgaccatgtgcgcaaactgttcgccgcgacggcg
caggcgcaagcactgggattcgatgccggacggttttccttcaacgtcgccaagggccgt
tgcgagacctgcgaaggtgaaggtttcgtcagcgtggaattgttgttcatgcccagcgtg
tacgcgccctgccccacctgccacggcgcgcgctacaacccgcagaccctggcggtgagc
tggcaaggcctggacatttcccaagtgctgcagctgaccgtgaatcaggcactcgaggtg
tttgccgagcaagcggcggcccggcgctcattgcaagtgctacaggatatcggactgggc
tacctgcgcctgggccaaccggccacggaactgtccggcggcgaagcccagcggatcaag
ctggcgacagaactgcagcgcaaagcccggggggcgacgttgtatgtgttggatgaaccc
accaacgggctgcacccccaggacgtcgaccgtttgttggtacagctgaatcgcctggtg
gaggaaggtcacacggtggttgtggtggaacatgacatgcgcgtcgtggcacagagtgac
tgggtcatcgatgtcggcccgggcgcgggctcccagggcgggaacgtcgtggcctgcggg
gctccggaggaagtcgcggcctgccgggaaagccggacggcggagtttctgaaaagggct
ttgcagcctggaagataa
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