Pseudomonas ogarae SWRI108: HU749_023585
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Entry
HU749_023585 CDS
T07889
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HU749_023585 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_023585 (sbcB)
Enzymes [BR:
pza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HU749_023585 (sbcB)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HU749_023585 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU749_023585 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HU749_023585 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QXH93786
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All DBs
Position
complement(5352100..5353533)
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AA seq
477 aa
AA seq
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MTSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAIT
GITPACLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDLVRAAYALRPQGITWPQEDGRVTLKLERLTAANGIDHGQAHDALSDVR
ATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIRLLQPMVHISGRFSAARNYIGVVLPLA
WHPKNRNALIVCDLHLDPQGLLDDDAESLRQRLYTRREELLEGELPVPLKLIHINKCPVI
APLSVLRAEDQQRLELDMEGYQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQQLYA
GFLGDRDRRLCEQVRLADPSQLAQERWPFDDERLPELLFRYRARNFPDTLNPEEQARWRL
FCQQRLSSPEWGAPNTLESFDAAMREWMDLSTPVQQEVLREWQSYSQQLRKRLSLEP
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccattttctggtacgactacgaaaccaccggcatcaacccgcgttgcgaccgg
cccttgcaggtggcgggtatccgtaccgatttcgaactcaatgaaatcgatgaaccggtg
aacctgtattgccggcccagcgatgacatcctgccgcatccggcggcctgcgcgattacc
ggcatcaccccggcgtgcctggccgaaaaaggcttgagcgaagccgatttcatgacccgt
gtccacgggcaactggccgcgcccggtacctgtggcgccggctacaacaccctgcgcttc
gacgatgaaatgacccgctacagcctctatcggaatttcttcgacccgtacgcgcgggaa
tggcagggcggcaacagtcgctgggacctcatcgatctggtgcgcgcggcctatgcgttg
cgcccgcaaggcatcacctggccgcaagaggacggtcgggtgaccctcaagctcgagcgc
ctgaccgctgccaatggcatcgaccatggccaggcccacgatgcgttgtcggacgtgcgc
gcgaccatcgccctggcccgcctgatccgtcagcagcagccccggctctacgactggctg
ttccagttgcgcagcaaacagaaggtgatggaccagatccgcctgttgcagcctatggtg
catatttccggtcgcttctcggcggcgcgcaactacatcggtgtggtcttgccgctggcc
tggcacccgaaaaaccgcaacgccctgatcgtctgcgacctgcacctggacccccagggc
ctgctggatgacgatgccgaaagcctgcgccagcgtttgtatacccgccgtgaagaattg
ctcgaaggtgagttgccggtgccgctcaagcttatccatatcaacaaatgcccggtgatc
gcgccattgtcggtgctgcgtgccgaggaccagcagcgactggaactggatatggagggc
tatcagcaacgggcattgcggctaactgacgcacagaaagtttggcaagataaacttcag
gccatttatgggcgcgaggatttcaccgccagcgaggatcccgagcaacagttatacgcg
ggcttcctgggggatcgcgatcgacgtttatgtgaacaagtccgcctggctgacccctcg
caattggctcaagaacgctggcctttcgatgatgagcgtttgccggaactattgttccga
tatcgcgcgcgcaactttccagacacgttgaatcctgaagagcaggcgcgttggagactt
ttctgtcaacaacggctgtcatccccggagtggggggcgcctaataccttggaaagtttt
gatgcggcgatgagggagtggatggacctgtctacaccagtgcagcaagaagtactccgg
gagtggcagagctacagccagcaattgcgtaaacgtttaagccttgagccgtga
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