Pseudomonas ogarae SWRI108: HU749_024080
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Entry
HU749_024080 CDS
T07889
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU749_024080 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_024080 (rhlB)
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU749_024080 (rhlB)
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU749_024080 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QXH93878
LinkDB
All DBs
Position
5467779..5469242
Genome browser
AA seq
487 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPGSPAPTHGPSHTDAQQPRRAAPVEQATKEPVAQPVTAPA
PEKPRNEAPKPRRERAPKPPVVAWKLEDFVVAPQEGKTRFHDFKLAPELMHAIQDLGFPY
CTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIA
PTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQ
RGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK
QWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVR
RIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN
FTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETPPTHLLR
PVERKRP
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggccgagcaactcgcg
cctggctccccagcgccgacccacggcccgagccataccgatgcgcaacaaccgcgccgg
gcggcacctgttgaacaggcaacaaaagaacccgtcgcccagcctgttacggcccccgcg
cccgagaaaccacgcaacgaagcccccaagccacgccgcgagcgcgcaccgaaaccgccg
gtcgtcgcctggaagctcgaggacttcgtcgtagccccccaggaaggcaagacccgcttc
cacgacttcaagctcgccccggaactgatgcatgccatccaggacctgggtttcccgtat
tgcacgccgatccaggcgcaggtgctgggcttcaccctcgcgggcaaagacgccatcggt
cgcgcccagaccggcaccggcaagaccgccgcgtttctgatctccatcatcacccagttg
ctccagaccccgccgcccaaggaacgctacatgggcgagccacgggcgctgatcatcgcg
ccgacccgcgagctggtggtacagatcgccaaggatgccgccgacctgaccaagtacacc
ggcctgaacgtcatgacgttcgtgggcggcatggacttcgacaagcagctcaagcacctc
gaagcccgccactgcgacatcctggtcgccaccccgggccgcctgctggacttcaaccag
cgcggcgacgtgcacctggacatggtcgaagtgatggtgctggacgaagccgaccgcatg
ctcgatatgggcttcatcccgcaagtgcgccagatcattcgccagaccccaccgaaaagc
gaacgccagaccctgctgttctccgccaccttcaccgaagacgtgatgaacctggccaag
caatggaccaccgatccgtccatcgtcgagatcgaagccgagaacgtcgccagcgaaaac
gtcgagcagcacatctatgccgtggccggtgccgacaagtacaagctgctctacaacctg
gtcaacgacaacggttgggaacgggtgatggtgttcgccaaccgcaaggatgaagtgcgg
cgtatcgaagaacgcctggtgcgcgatggcgtcaacgcggcccagctctcgggcgacgtg
ccgcagcacaagcgcatcaagaccctcgagggtttccgtgaaggcaagatccgcgtactg
gtcgccaccgacgtggccggtcgcggcatccacatcgacggcatcagccacgtgatcaac
ttcaccctgccggaagtgccggacgactatgtgcaccgcatcggccgtaccggtcgtgcc
ggcgccgcgggggtttccatcagcttcgccggggaggacgactcctaccagttgccgtcc
atcgaggccttgctggggaaaaagatcaattgcgaaactccgccgacgcatctgttgcgg
ccggttgagcgcaagcgtccttaa
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