Pseudomonas ogarae SWRI108: HU749_026925
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Entry
HU749_026925 CDS
T07889
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU749_026925 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pza03021
]
HU749_026925 (rpoB)
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_026925 (rpoB)
Enzymes [BR:
pza01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU749_026925 (rpoB)
Transcription machinery [BR:
pza03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU749_026925 (rpoB)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU749_026925 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QXH94405
LinkDB
All DBs
Position
complement(6081851..6085924)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVQGEN
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELQVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLNKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgttacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttctccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaaactgctttactccgcgcgcatc
attccttaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcgctcggctatacc
accgaagaagtgctggacgcgttctacaccaccaacgttttccatgtgcaaggtgaaaac
ctcagcctggaactggtgccacagcgcctgcgcggtgaaatcgctgtcctcgatatccag
gatgacaaaggcaaggttattgtcgagcagggtcgtcgtatcaccgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctgcaggtgcctctggactacgtcctgggtcgc
accacggccaaggtcatcgtgcatccggccaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcgaaaatcgccaaggcccaggtcgttcgcatcgagacg
ctgtacaccaacgacatcgactgcggtccgttcatctccgacacgctgaagatcgactcc
accggcaaccaactggaagccctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggtgtactgaacaaggacgacatcgttgcggtcctcaagaccttggtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgagatggccgagaaccagttccgtgttggcctggtgcgcgtagagcgtgcggtc
aaggaacgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagcctgtggctgcggcggtgaaggagttcttcggttcgagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgcgtctccgcactcggcccg
ggcggtctgacccgtgagcgtgcaggcttcgaagttcgtgacgtacacccgacgcactac
ggtcgtgtatgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtgaaa
gacgccctggtgaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaggtcctggtcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgtg
tcgccgaagcaggtagtttcggttgcagcgtcgctgatcccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtacccaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgtaacgttgcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgggttcagcgcagcgacatcatggccgacggtccgtccaccgatatgggtgagctggcg
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggctcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacattctggtgggcaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgcctaccggcaccaagggtaccgtcatcgacgtacaagtcttcact
cgcgacggtgttgagcgtgatgctcgtgcactgtccatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgtcgaaggcgcaactttcgagcgtctg
cgctccgctctggtcggccacaaagccgaaggcggcgccggcctgaagaaaggtcaggaa
atcaccgacgaagttctcgacggtcttgagcatggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggcccaggcctatatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggctggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaagggc
ttgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcggacctgcgtaag
ttcctgcacgagatctacaacgaaatcggcggccgcaacgaagagctggacaccttctcc
gaccaggaaatcctggacctggcgaagaacctgcgcggcggcgttccaatggctactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcggacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcgtacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
