Pseudomonas ogarae SWRI108: HU749_027950
Help
Entry
HU749_027950 CDS
T07889
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pza
Pseudomonas ogarae SWRI108
Pathway
pza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU749_027950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pza03019
]
HU749_027950
Enzymes [BR:
pza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU749_027950
Messenger RNA biogenesis [BR:
pza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU749_027950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXH94595
LinkDB
All DBs
Position
6311036..6312907
Genome browser
AA seq
623 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
GRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDD
VDNFGNRVDYVPQQKPAQGRGRRPGAPTQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPP
AKRSGPRNGAPRDGQARRDDTRPRRPAHDDQPRQEPAVQNPRGNQPKIMHKESKADRFPT
PEQLDQLPSRPRGEKPALLTRNR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tatacccagcctaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccagacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactggcggcccaggtccacgagagcttcaag
gtctacgctcgcgacctgaagttcgtcagcgcctgcatttttggcggcgtgggcatgaac
ccccaggtccaggccatgtcccgtggcgtcgatgtactggtcgcctgccccggtcgcctg
ctggacctggccggccagggcagcgtcgacttgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgccagaacctgctgttttcggcgacgttctccaaggacatcaccgac
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccaccgaacaccacg
gtcgagcgcatcgagcaacgcgttttccgcctgccagccagccacaagcgtgccctgctc
gcgcacctgattaccgccggtgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgccggctgtggcgatccac
ggtaacaagagccagaatgcccgcaccaaggccctcgccgacttcaaggccggcgaagta
cgcatcctggtggccactgatatcgccgcccgtggcctggacatcgaccagttgcctcac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggccgggccggtcgttcgggcgaagcgatctcgctggtcgcgcccgacgaagaaaagttg
ctcaaaagcatcgagcgcatgaccaagcagaaaattgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgcgaacgtccggacgtgcgcaat
ccgcgcaatgcccgcggcccacgcggcgacggtccgaatggcggcggtggtggtggcggc
ggccgcaaagacaaaggcaaggacaagggcaaggaaaaatcggccagcaacagcaatggc
cgcggcgaacgccctgcccgcgagcagaagccccgcgaaggcacaccggcccgtgaacag
cagcgtccagccccacgcgccgcagccgatcgcgccccggacgagttcctggacgacgac
gtcgacaacttcggtaaccgcgtcgactacgtgccgcaacagaaaccggcgcagggccgt
ggtcgtcgcccgggtgccccgacacagggtgcagctgcaggcgcgccgcgcagtggccag
ccacaaggccgccagaacggtccgcgcaacagcaacggctcgtccaccggtacgccaccg
gccaagcgcagcggcccacgcaacggtgccccgcgtgacggccaggcccgtcgcgatgac
acccgcccgcgccgcccggcccatgacgaccagcctcgtcaggaacccgccgtgcagaac
ccgcgcggcaaccagccgaagatcatgcacaaggagtcgaaagccgatcgcttcccgacg
cctgagcaactggatcaactgccaagccgtccacggggcgaaaaaccggcattgctgacg
cgcaatcgctga
DBGET
integrated database retrieval system
