Stutzerimonas zhaodongensis: KQ248_06185
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Entry
KQ248_06185 CDS
T09079
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KQ248_06185 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzd03400
]
KQ248_06185 (recD)
Enzymes [BR:
pzd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KQ248_06185 (recD)
DNA repair and recombination proteins [BR:
pzd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KQ248_06185 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
UvrD-helicase
Helicase_RecD
AAA_22
SLFN-g3_helicase
UvrD_C
nSTAND3
AAA_16
CbiA
AAA_28
DEAD
Flavi_DEAD
DUF87
T2SSE
AAA
ATPase
Motif
Other DBs
NCBI-ProteinID:
QWV18260
LinkDB
All DBs
Position
1326978..1328828
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AA seq
616 aa
AA seq
DB search
MTLRSELPLGPLERAFVASLQRLEPDAPEPVLLAAALCCEALASGDVCLPLQRFAGKRPW
PEVDLALPSLAQWRTQLEASPLIGGPDDYAPLTLVGDRLYLARYQAYEEQLAEQLLTRAA
DAPDVDETQLSDSLARLFAFNQQSPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLA
ALLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKAELPVSDAVKDALPDEARTLHRLLGS
RGDSPKVRHDAANPLALDVLVVDEASMVDLALMAKLVAALPPKARLILLGDKDQLAAVEA
GAVFAELCEGRGFDSQAAADLQRITGQHVSVEPPRSRLGDAVVLLTYSHRFAGDSGIGEL
ARRINGGDAKGTIALLQEGRADLAWNGTPTSAALIERLEQGYSPYLQGARQADPAAAFEA
FNGFRALTAQREGPFGVTGINEALEARFKRRLGVPARERWYSGRAVMVRQNDYALGLFNG
DIGLCLKTEQGLRVFFEGDEGYRGFAPARLPSHDSAFAMTVHKSQGSEFSEVLLALPEQP
SPLLTRSLFYTGITRAKRKVEIWALPVRLGEAVSTRAERAAGLAERLSLGNTNRTGEGDG
LPKPASEPVGDQLSLF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttcgttcagagttacccctcggccccctggagcgcgccttcgtcgccagcctg
caacgcctcgaaccggatgcgcccgagccggtgctgctcgccgctgcactctgctgtgaa
gccctggcgtcaggggatgtctgcctgccgcttcagcgattcgccggcaagcgaccttgg
cctgaagtcgacctggctttgccgtcgctggcgcaatggcggacgcaacttgaggcctcg
ccactgatcggcggaccggacgattacgcgccactgactcttgtcggtgaccgcctctac
ctggcccgttaccaagcctacgaggagcaactggccgaacagctgctgactcgcgcagcg
gacgcaccggatgtcgatgaaactcagctgagcgacagcctggcgcggttgttcgccttc
aatcagcaaagccccgactggcagcgcctcgcggcagcacaggcggtacgccggcgactg
gctgtgatctccggtggtcccggcaccggcaagaccaccactgtggtgcgcctgctggcg
gcattgctggagcagcccggcggcgaacgcctggccatcggccttgcggcccccaccggc
aaggcggcggcgcgcatggccgaggcgatccgtaatgccaaagccgagctgccggtcagc
gatgccgtcaaggacgccctgccggacgaggcgcgcaccctgcatcgtctgctcggtagc
cgcggcgacagcccaaaggtgcgccacgatgcggccaacccgttggcgctggacgtcctg
gtggtggacgaggcatccatggtcgacctggcgctgatggccaagctggtcgctgcgctg
ccgcccaaagcgcggctgattctgctcggcgacaaagaccaattggccgccgtggaagcc
ggcgcggtgttcgccgaactctgtgaaggccgagggttcgatagccaggccgcggccgat
ctgcaacgcattaccgggcagcacgtatcggtcgaaccgccgcgctcgcgcctcggcgat
gcggttgtgctgctcacctacagccaccgcttcgccggcgacagcggcatcggtgagctg
gcgcggcgaatcaatggcggcgacgccaagggcacgattgcactgctgcaggaagggcgc
gccgatcttgcctggaatggcacgccaacgtccgccgcactgatcgaacgattggagcag
ggctattcgccctatctgcagggcgcacgccaggccgatccagccgccgccttcgaggcc
ttcaacggcttccgcgcgctgaccgcccagcgcgaagggcctttcggcgtgaccggcatc
aacgaggcactggaagcgcgcttcaagcgtcgcctcggcgtgccggcgcgcgaacgctgg
tactccggccgcgcggtgatggtccggcagaacgactacgccctgggcctgttcaacggc
gatattggcctgtgccttaaaaccgagcagggcctgcgggtgttcttcgagggcgacgag
ggctatcgcggctttgccccggcgcgcctgccgagccatgacagcgccttcgccatgacc
gtgcacaagagccagggctcggaattcagtgaagtgctgctggcgctgcccgagcagccc
agcccgctgctgacccgctcgctgttctacaccggcatcacccgtgccaagcgcaaggtg
gagatttgggcgctgccggtgcgtctgggcgaggccgtaagcacccgcgccgagcgtgcg
gccggacttgctgaaaggctgagcctaggcaacacgaatcgcacaggcgagggggatggc
ctgccgaagccggccagcgagccggtgggcgatcagctcagcctgttctga
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