Stutzerimonas zhaodongensis: KQ248_08050
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Entry
KQ248_08050 CDS
T09079
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pzd
Stutzerimonas zhaodongensis
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzd03019
]
KQ248_08050 (hrpB)
Enzymes [BR:
pzd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KQ248_08050 (hrpB)
Messenger RNA biogenesis [BR:
pzd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KQ248_08050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_22
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QWV18602
LinkDB
All DBs
Position
1765250..1767760
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AA seq
836 aa
AA seq
DB search
MIALPIDEALPALRQALQSRDEAVLEAPPGAGKTTRVPLALLNEPWLAGQSILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLESKVGPNTRIEVVTEGILARRLQDDPALEGVGL
VIFDEFHERSLDADLALALTLNARQLLRDEPLKLLLMSATLEGARLSALLDDAPVVRSEG
RMYPVTQRWGRPFQVGERIEPRVVQTILQALDEESGSVLVFLPGQAEIRRVNDMLAEQLG
DRGEVMLCPLHGELELTAQRAAIEPAPAGKRKVVLATNIAETSLTIEGVRVVVDAGLARV
PRFDPGSGMTRLETRRISRASATQRAGRAGRLESGACYRLWSEDQHAQLSAYGDAEILQA
DLAGVALQLARWGVEPDELAWLDRPPAAAYAQAQDLLQRLGALGRTARGGWQLTAHGQAM
AELPAHPRIAHLLLRGQALGLAPLAADLAALLVERDIQRGGERGGADISTRLGLLDGSAG
RHAGAQRVRQLARQFRGLLRGPSAPAPVDASDHRWHGALLAFAYPDRIARQRRDGGGEYR
LANGRAAVFGEPDALMKEPWLVIAELSSRQGQREERIYRAAALDPALFEEVLAEQVSQRD
ELEWDEREGVLRAERQRRVGELILSRERLPGLDDEARGRALFGLVRRKGLELLPWTPDLR
QWQARIGLLRQLDLRTGDSSEWPDVSDAALLERLEDWLLPYLGKVSRLAHFAGLDLQSML
ATLLPWPLPQRLDELAPVAIAVPSGSRVRLDYNESPPVLAVRLQELFGLADTPRIAGGRQ
VVKLHLLSPARRPVQVTQDLASFWANTYIEVKKDLKGRYPKLFHKLDPWVDTLNKK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgattgctctgcccatcgatgaagccctcccggcgctgcgccaggccctgcaaagccgt
gacgaagcggtgctcgaagcgccgcccggtgctggcaagaccacccgtgtgccgctggcc
ttgttgaacgagccatggctcgccggacaatcgatcctgatgctcgaaccgcgccgcctg
gcagcccgggcagcggccgagcggctggccagcgagttgggcgaaaaggtgggtgaaacg
gtcggctatcgcatccggctggagagcaaggtcgggccgaacacccgcatcgaagtagtc
accgagggcatccttgcccgccgcttgcaggacgacccggcccttgagggtgttggcctg
gttatcttcgacgaatttcacgagcgcagtcttgatgccgatctggccctggcgctgacg
ctcaatgcacgtcagctgctgcgcgatgaaccgctcaaactattgctgatgtccgcgacg
ctcgaaggcgcgcggctgtccgctctgctcgacgatgcgccggtggtgcgcagcgaaggc
cgcatgtatcccgtcacgcagcggtgggggcggcccttccaggtcggtgaacgcatcgag
ccgagggtggtgcagaccatcttgcaggcgctggatgaagagtccggtagtgtgctggtc
ttcctccccgggcaggccgagatccgccgcgtgaacgacatgctggccgagcagctgggg
gatcgaggcgaggtgatgctctgcccactgcacggcgaactggaattgaccgcccagcgt
gcggccatcgagcccgcgcctgccggcaagcgcaaggtggtcctggcgaccaacatcgcc
gagaccagcctgaccatcgaaggcgtgcgggtcgtggtcgacgcgggactggcgagagtg
ccgcgcttcgatccaggcagcggcatgacgcggttggaaacacggcgtatctcccgcgcc
tcggcaacccagcgggccgggcgagcaggacgactggagtctggcgcgtgttatcggttg
tggtcggaagatcaacatgcgcagctgtccgcctatggcgacgcggaaatcctccaggcc
gatctggccggcgtggccttgcagctagcgcgctggggtgtcgaaccggacgaactggct
tggctggaccggccgcctgccgcggcttacgcccaggcacaggatctgctgcagcgtctc
ggtgcgctcggtcggactgctcgcggcggctggcagttgaccgcccacggccaggccatg
gccgaactgcccgctcacccgcgtatcgcccatctgctgctgcgcggtcaggcgctgggc
ctcgcgccgctggccgcggatctcgctgcactgctggtggagcgcgatatccagcgcggc
ggtgagcgcggcggcgcggacatttccacccgtctcggcctgctcgacggcagcgcgggc
cggcatgccggcgcacaacgggtgcgccagctggcccgacagttccgcggcttgctgcgt
gggccttcggcgccggcaccggttgatgcttccgatcatcgctggcacggcgcgctgctg
gcgtttgcctatcccgacaggatcgcccggcagcgccgtgatggcggtggcgaatatcga
ctggccaacggtcgagcggctgtattcggcgagccggacgccctgatgaaagagccttgg
ctggtgatcgccgaattgagcagtcgtcagggccagcgcgaggagcgcatttaccgcgcg
gcggcactggacccggcactgttcgaggaggtgctggccgagcaggtcagccagcgcgac
gaactggaatgggacgagcgcgaaggcgtgctgcgcgccgagcggcagcggcgggtcggc
gagctgatcctcagtcgcgaacgcttgccggggctggatgacgaggcccgtggccgcgcg
ctgttcgggctggtgcggcgcaaagggctggagctgctgccctggaccccggatctgcgc
cagtggcaggcgcgaatcggcctgctcaggcagctcgatctgcgcacgggcgactcaagt
gaatggcccgacgtcagcgacgcggcgctgttggagcggctcgaagactggttgctgccg
tatctgggcaaggtttcgcggctggcgcacttcgctgggctcgaccttcagagcatgctc
gcgaccttgttgccctggccgctgccacagcgactcgacgaactggcaccggtcgccatt
gctgtgccatccggttcgcgggtgcggctcgactacaacgaatcaccgccggtgctggcg
gtgcgcttgcaggaactgttcggtttggccgacacgccgcgcatcgctggcgggcggcaa
gtggtgaagctgcatctgctgtcacccgcgcgccggccggtgcaagtgacccaggatctg
gccagcttttgggccaacacctacatcgaggtgaagaaggacctgaaaggccgatatccc
aaactattccataagcttgacccctgggtcgatacccttaacaagaaatga
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