Stutzerimonas zhaodongensis: KQ248_08940
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Entry
KQ248_08940 CDS
T09079
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ248_08940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzd03019
]
KQ248_08940 (rnr)
03016 Transfer RNA biogenesis [BR:
pzd03016
]
KQ248_08940 (rnr)
Enzymes [BR:
pzd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KQ248_08940 (rnr)
Messenger RNA biogenesis [BR:
pzd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQ248_08940 (rnr)
Transfer RNA biogenesis [BR:
pzd03016
]
Prokaryotic type
tRNA degradation factors
KQ248_08940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM_2
OB_Dis3
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
QWV18753
UniProt:
A0ABX8J117
LinkDB
All DBs
Position
1947616..1950153
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AA seq
845 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILKHLSERGSPAAREQLVEEFGLSSEDDIEALR
RRLRAMERDGQVIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDRSDDLFLSPAQMR
LVFDGDRCLARVAGLDRRGRREGAIVEIIGRAHETIVGRYQEESGIGFVMADNPKIQQEV
LVTPGRSMDAKPGQFVEIKITHWPTQRFQPQGDVVEVIGNYMAPGMEIDVALRSFDIPHV
WPDAVKREAAKLKPEVEEKDKQKRVDLRHLPFVTIDGEDARDFDDAVYCEKLSGWKLFSG
GFRLYVAIADVSHYVKVGSALDQEAEVRGTSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEITLSKSGNMTDYQFYEAVIHSHARLTYNKVSSMLEQPSSAEGKRLIGEYGEVLPD
LKQLYALYKILLKARHARGAIDFETQETRIVFGAGRKISEIKPTERNDAHKLIEECMLCA
NVATARFLQDHDIPGLYRVHDGPPLERQEKLRAFLGELGLTLHKGKEGPTPKDYQALLEH
IQGRPDFHVIQTVMLRSLSQAVYSPDNNGHFGLNYEAYAHFTSPIRRYPDLLIHRAIRSV
IRSKRDTSHVRRAGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEF
MKDRVGENFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGR
SFRLGDSVEVRVMRVDLDERKIDFELIGGGSKTGAGERGASDGRGGRKDGRGKKGADASL
SKGNESVSDDVRKSREIKKALLGDAKAGKTSKSKPKRSGSKPKAAAGKATPKPEGAAPRK
RKAKP
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgcacgtgaagcggaaaagtacgaaaac
cccatccccagccgcgaattgatactcaagcatctgagcgagcgcggctcgccagcggcc
cgtgagcagctggtagaggagttcggattatcctccgaagatgacattgaggctctgcgc
cgccgtttgcgcgcgatggagcgtgacggtcaggtgatctatacccggcgtggcacctat
gccccggtagacaagctggacctggtttgcggtcgcgtcagcggccatcgcgacggtttc
ggtttcctcatccctgatgaccgcagcgacgatctattcttgagtccagcacagatgcgt
ctggtgtttgacggcgaccgttgcctggctcgcgtggccgggcttgatcgccgcgggcgg
cgcgaaggtgcgattgttgagatcatcggtcgtgcccacgaaaccatcgtaggtcgctac
caggaagaaagtggaatcggctttgtgatggctgataaccccaagatccagcaggaagtg
ctggtcacgccgggtcgttccatggatgccaagccgggtcagttcgtcgagatcaagatt
acccactggccgactcagcggtttcagccacagggcgacgtggtcgaggtcatcggcaac
tacatggctcccggtatggagatcgatgtcgcgcttcgcagcttcgacattccgcatgtc
tggccagatgcggtaaaacgcgaagccgccaagctcaagccggaagtcgaggagaaggac
aagcagaaacgcgtcgaccttcgccacctgccgttcgtcaccatcgacggcgaggatgcg
cgagacttcgatgatgccgtttactgcgagaagctcagtggctggaagctgttttccggt
ggtttccgcctgtacgtggcgatcgccgatgtctcgcactatgtcaaggtcggctcggcg
ctggatcaggaagctgaagtacgtggcacctcggtgtatttccccgagcgggttgtgccg
atgctgcccgaagagttgtcgaatgggctctgctcgctaaatccgcatgtcgaccgtctg
gcgatggtctgcgaaatcacccttagcaagtcggggaatatgacggattaccagttctat
gaagcggtgatccattcccacgcacgactgacctataacaaggtcagcagcatgcttgag
cagccatcttcggctgaaggcaaacgccttatcggcgagtacggtgaagtgctgcccgac
cttaagcagctctatgcgctctataagatattgctcaaggcgcggcatgcccgtggggca
atcgacttcgagacgcaggaaacccgcatcgttttcggtgctggtcgcaagatctcggag
atcaagccgaccgagcgcaacgacgcgcacaagctgatcgaggagtgcatgctatgcgcc
aacgtggccactgcacgcttccttcaggatcacgacattccgggcttgtatcgtgtgcat
gatggtccccccctggagcgtcaggagaaactccgagcgtttctcggcgagctgggcctg
accttgcacaagggcaaagaggggccaacgcccaaggattaccaggcgctgctggagcat
atccaggggcgtcccgacttccatgtgattcagacggtaatgctgcgctccctcagtcag
gcggtttacagtcctgacaacaatggccatttcggcctgaactacgaggcatacgcacat
ttcacatcgccgattcgccgctaccccgatctgctgatccatcgggcgatccgcagcgtg
atccgctccaagcgcgacacgtcgcacgttcgccgtgcgggcgctaccagcatgcccaag
gcgcgcatctatccgtatgacgaggccgcattggagcagttgggcgagcagtgctcaatg
accgagcgccgcgccgatgaagcgacccgtgatgtcgtgaactggctgaaatgcgagttt
atgaaagaccgggtcggtgagaatttccccggcgttatcacggccgtgaccggcttcggc
ctgttcgtcgagctgaccgatatctacgtcgaagggttggtgcacgtgacggcgatgccg
ggcgactactaccacttcgatccgttgcatcatcgcctgtccggtgagcgcagcggtcgc
agcttccgtcttggcgacagcgtcgaggtgcgggtcatgcgtgtcgatctcgatgagcgc
aagatcgacttcgagctgattggcggtggcagcaagaccggagccggcgagcgcggagcc
tcggacggccgcggcggacgtaaagatggtcgcggcaagaaaggcgctgatgcgtctttg
tcgaagggcaatgagtcggtcagcgatgacgttcgcaagagccgtgagatcaagaaggca
ctgttaggcgacgccaaggcaggcaaaacctcgaagagcaagccaaagcgcagcggctcg
aaaccgaaggcggccgccggcaaggccacgccgaagcccgagggcgccgcgccccgtaag
cgtaaggccaaaccatga
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