Stutzerimonas zhaodongensis: KQ248_10930
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Entry
KQ248_10930 CDS
T09079
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pzd
Stutzerimonas zhaodongensis
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzd03019
]
KQ248_10930 (hrpA)
Enzymes [BR:
pzd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KQ248_10930 (hrpA)
Messenger RNA biogenesis [BR:
pzd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KQ248_10930 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
ABC_tran
ResIII
HCV_NS5a_C
Motif
Other DBs
NCBI-ProteinID:
QWV19111
LinkDB
All DBs
Position
2385846..2389955
Genome browser
AA seq
1369 aa
AA seq
DB search
MTDATPAFDQLLKNLDQAMYADRHRLRRQLHDLRKKVGAAPLEDERLAQWLERFHASAAK
AEARRQSVPTMRYDDSLPIAAKREEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRG
VHGLIGHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLA
ETQHDRFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSEH
FAGAGLPGAPIVEVSGRTFPVETWYRPLAAESDEDGNRVEDDLTVDQGILASLDEIEAHE
KSVGKRPGDVLVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFRPAAGRK
IVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRV
EPGICIRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGQIEDFPFIEPPDGRAIS
DGFNLLQELSAVNRENQLTPLGRQLARLPIDPRLGRMLLEAAQLGSMAEVLIVASALSVQ
DVRERPADRQQQADQAHAQWKDPDSDFAALINIWRGFEEQRQALGSNPLRTWCRKNFLNY
LRLREWRDAHRQLTLIVRELKLQEHKEPASRRSQLAGHHVSEREDRQQAGSYNERPEPPA
LTTDKKLNAKLTQQTEASEAAQKAKSYAAVHKAILSGLLSQVGHKTEEGDFLGARQRRFW
VHPSSVIGRKKPNWIMAAELVETTKLFARMVAKIEPDWIEPLAKHLIKTNHFEPHWEKKR
GQVVAFEQVTLYGMIVVARRPVHFGPIDPPAARELFIREGLVRGEMLSRAKALTANRELL
ELFDELEAKARRRDIIADEDTLFAYYDARVPQDIYQTASFESWYKRESAKHPQLLVMRDE
DVLARDASEVTAAMYPDHLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDW
LVPGLIEAKAVALVRNLPKAIRKNFVPVPDFVKAALSKVSFAEGALPEALGRELLRMTGA
RVPDQAWAEAAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFNEASQAALAPPQQKA
EQKPVEAKGFAQVAEKAQAKMAGLSMTVYPALVEEGGVVKEGRFPTQAEADYQHRRALQR
LLLQQLAEPAKYLRNKLPGLTELALLYRDMGKIDALVEDILLASLDSCILDGEAQLPRDG
AALASLAERKRGDWATHAERLARLTLDILKIWHGLQKRFKGKIDLAQAVALNDIKAQLGN
LVYSGFVRETPGEWLKEYPRYLKAVEQRFEKIGAQLQRDRVWSGELAGYWEQYQARLKKH
QQEGKRDPELVLYRWMLEEYRVSLWAQQLGTKMAVSDKRLNKQWSQVEA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgcctttgatcaactcctgaaaaacctcgaccaagcgatgtac
gccgatcgccatcgcttgcggcgccagctgcatgacctgcgcaagaaagttggcgctgca
ccgctcgaagacgagcgcctcgcccagtggctcgaacgtttccacgcctctgccgccaag
gccgaggcgcggcggcagagcgtgccgaccatgcgctacgacgacagcctgccgattgcc
gccaagcgcgaggagatcaaggccgcgctggaaaagcaccaggtgttggtgatcgctggg
gaaacgggttctggcaagaccacccagttgccaaagatctgcctggaaatcggccgtggt
gttcacgggctgatcggtcatacccagccgcgtcgactggctgcacgcagcgtcgcgacg
cgggtagccgaggaaatcggtacgccactgggtgagctggtgggttatcaggtccgcttc
gaggaccagagcaaagacagctcgctgatcaagctgatgaccgacggcatcctgctggcc
gaaacccagcacgaccgtttccttgagcgctacgacaccatcattgtcgacgaggcccac
gaacgcagcctcaacatcgatttcctgctcggctacctcaagaccttgctgccacggcgg
ccggatctcaaggtcatcatcacctcggcgaccatcgatctggagcgcttcagcgagcac
tttgctggggccggccttccgggcgcgcccatcgtcgaggtgtccggccgaaccttcccg
gtcgaaacctggtatcgcccgctagcggcggaaagcgacgaggacggcaaccgggtcgag
gacgatcttactgtcgaccaaggcattctggcgtcgctggacgaaatcgaggcgcatgaa
aaaagcgtcggcaagcgcccgggcgatgtgctggtgtttctgcccggtgaacgcgagatc
cgcgatgccgccgaagtgctgcgcaaggccaacctgaagttcaccgaggtgttgccgctg
tatgcgcgtttgaccccggccgagcagcagaaaatcttccgccccgcggccggtcgcaag
atcgtgctggcaaccaacgtggctgagacgtcattgaccgtgcccggtatccgctacgtg
atcgattcgggcacggcgcgcatcagccgctacagctatcgcgcaaaagtgcagcgtctg
cccatcgaggcggtgtcccaggccagcgccaaccagcgcaaaggccgttgcgggcgggtc
gagccgggcatctgcattcgcctctacagcgaggaggattttctcggccggccggaattc
accgacccggagatcctgcgcaccaatctcgcggcggtcatcctgcagatgctgcatctg
cgccttggccagatcgaggatttcccctttatcgagccgccggatggcagggcgatcagc
gatggcttcaacctgttgcaggagctgtcagcggtcaaccgcgaaaaccaactaacaccg
ctgggccgacagctggcgcgtttgcccatcgacccgcgcctgggccgcatgctgcttgaa
gcagcgcagttaggcagcatggccgaggtgctgatcgttgccagtgcgctgtcggtgcag
gacgtacgcgagcgcccggccgatcgccagcaacaggctgatcaggcccatgcgcagtgg
aaggatccggattctgacttcgccgcgctgatcaatatctggcgcggcttcgaagaacag
cgccaggcgctcggttccaatccgttgcgcacatggtgccggaagaatttcctcaactat
ctccgccttcgtgagtggcgtgatgcgcatcggcaactgacgcttatcgtgcgggagttg
aagctgcaggagcataaagagcctgcttctcgtaggagccagcttgctggccatcatgtc
tccgagcgcgaggatcgccagcaagctggctcctacaacgagcgtccggagccgcctgcg
ctcaccaccgacaaaaagctcaacgccaagctcacccaacagaccgaagccagcgaggcc
gcgcagaaggccaaaagttacgcggccgtgcataaggcgatcctgtccggcctgctcagc
caggtcggccacaagaccgaggagggcgacttcctgggtgcccgccagcgacgcttctgg
gtgcacccatccagcgttatcgggcgcaagaagcccaactggataatggcggcggaactg
gtcgaaaccaccaagctgttcgcccgtatggtggcgaaaatcgaaccggactggatcgag
ccgctggccaagcacctgatcaagaccaaccacttcgagccgcactgggagaagaagcgc
gggcaggtggtggcgtttgagcaggtcaccctgtacggcatgatcgtggtggcgcggcgc
ccggtgcatttcgggcctatcgacccgcctgccgcaagggagctgttcattcgcgaaggc
ctggtgcgtggcgagatgctcagccgggccaaagcgctgaccgccaaccgcgaactgctg
gagctgttcgacgagctggaagccaaggcccggcgacgcgacatcattgccgatgaagac
acgctgtttgcctattacgacgcacgcgtgccgcaggacatctaccagaccgctagtttc
gaaagctggtacaagcgcgagagcgccaaacacccgcaactgttggtcatgcgcgacgaa
gacgtgctggcgcgtgatgccagcgaagtcactgcggcgatgtatccggatcatctgcgc
atcggcgagctgcaactgccgctggagtaccatttcgagcccaaccatccgcgcgacggc
gtgactctgcgtgtgcctgcgccattgctgccgcagttgcgcagcgaacggctggactgg
ctggtgccagggctgatcgaggcaaaggcggtggcgctggtgcgcaacctgccgaaagcg
atccgcaagaacttcgtgccggtgcccgacttcgtcaaggcggcactctcgaaagtcagc
tttgcggaaggcgcgctgcctgaggcgctgggtcgcgagctgctgcgcatgaccggcgca
cgggttccggaccaggcctgggccgaagccgcagcgggcctggaaagtcatctgaagatg
aacatcgaggtggtcgacgcgcgcggcaagtttcttggtgaaggtcgtgatcttgccgag
ctgaccgcacgcttcaatgaagctagccaggctgcgctggcgcccccgcagcaaaaggct
gaacagaaaccggtggaggccaagggcttcgcccaggtggcggaaaaagcccaggcgaaa
atggcggggctgtccatgaccgtctacccggcactggtggaagagggcggggtggtcaaa
gaaggccgcttcccgacccaggccgaagccgactatcagcaccgccgcgccctgcaacga
ctgctgctgcagcaactggccgaaccggccaagtacttgcgcaacaagctgccaggactg
accgaactggcgttgctgtaccgcgacatgggcaaaatcgatgcgctggtcgaggacatc
ctcctggccagcctcgacagctgcatcctcgacggcgaagcgcaactgccacgcgatggt
gctgcgcttgcgtcattggcggaacgcaagcgtggcgactgggcgacccatgctgaacgt
ctggcccgcctgacgctggacatcctcaagatctggcatggcctgcagaagcgcttcaag
ggcaagatcgacttggcccaggcggttgcgctcaacgacatcaaggcgcagctgggcaat
ctggtctattctggcttcgttcgcgaaacaccgggcgaatggctcaaggaatacccgcgc
tatctcaaagccgtcgaacagcgctttgagaagatcggcgcgcagctgcagcgtgatcgg
gtgtggtccggcgaattggctggctactgggagcagtaccaggcgcggttgaaaaagcat
cagcaggaaggcaagcgcgatccggaactggtgctgtaccgctggatgctggaggagtat
cgcgtgtcgctctgggcccagcagctgggcacgaagatggcggtatcggacaagcgcttg
aacaagcagtggagccaggtggaggcctga
DBGET
integrated database retrieval system
