Stutzerimonas zhaodongensis: KQ248_18365
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Entry
KQ248_18365 CDS
T09079
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ248_18365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzd03019
]
KQ248_18365
03009 Ribosome biogenesis [BR:
pzd03009
]
KQ248_18365
Enzymes [BR:
pzd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQ248_18365
Messenger RNA biogenesis [BR:
pzd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQ248_18365
Ribosome biogenesis [BR:
pzd03009
]
Prokaryotic type
rRNA helicases
KQ248_18365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QWV16437
UniProt:
A0A365PXG9
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All DBs
Position
complement(4053398..4055059)
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AA seq
553 aa
AA seq
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MTQEIGSFAALGIHPSVLAAVTAVGYEEPSAIQSQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARKEVQALILAPTRELALQVATAFETYAKQMPGLTVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLSRNSALLGTIQYLVLDEADEMLKLGFMDDLEVIFEAMPES
RQTVLFSATLPHSIRAIAEKHLREPQHIKVATKTQTVTAIEQAHLMVHADQKIAAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVSRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTNQKVAEARLPNGQQVLEARIKKLTNSLAPLVADAEASHGELLDKLVADTGCSLRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSSPRERSDRPERSGDRERRAPIPLAEGRARCR
TALGARDGIAARNLLGAILNEGGLAREDIGRIQVRDSFSLVELPEEGLERLLGKLKDTRV
GGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcagctttgctgcactcggtattcatccctccgtactcgccgct
gttaccgcagtgggctacgaagagccttcggccatccagagccaggctatcccggtaatt
ctcggcggccacgacatgatcggtcaggcccagaccggtaccggcaagaccgcagccttc
gcgctgcccattctgtcgaagatcgatcccgctcgtaaggaagtacaggcgctgattctc
gcgccaacccgcgagctggcgctgcaggttgccaccgcgttcgaaacctatgccaagcag
atgcctggcctaaccgtggtcgccgtctacggcggcgctccgatgggtccgcagctcaag
gccatccgccagggcgcgcaggtcatcgtcgctacacctggccgtctggtcgaccacctg
agccgcaacagcgcgctgctgggcacaatccagtacctcgtactcgacgaagctgacgag
atgctcaagctgggcttcatggacgacctcgaagtcatcttcgaagccatgccggaaagc
cgccagaccgtgctgttctccgcgaccctgccgcactccattcgcgccatcgccgagaaa
cacttgcgcgagccgcagcacatcaaggtcgctaccaagacccagacagtgaccgccatc
gagcaggcacacctgatggttcatgccgaccaaaagatcgcagccgtcctgcgcctcctg
gaagtcgaagacttcgatgcactgatcgctttcgtgcggaccaagcaggccacgctggat
ctcgccgctgcgctggaagccaagggctacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgtgtcatcgagtcgctcaaggacggtcgcctggatatcgtggtc
gccaccgacgtcgccgctcgcggcctcgacgtatcgcgtattacccacgtgttcaacgtg
gacatgccctatgacccagagtcctacgttcaccgcatcggccgtactggccgtgccggt
cgtgaaggtcgcgcactgctgctggtcacgccgcgtgagcgtcgcatgctgcaagtcatc
gagcgcgtcaccaaccagaaggttgccgaagcccgcctgccgaacggccagcaagtactt
gaggcgcgcatcaagaagctgaccaacagcctggctccgctcgtggccgacgccgaagcc
agtcatggcgaattgctcgacaagctagttgccgacaccggctgcagcctgcgtgcactg
gccgccgccttgttgcgtaaagccactaacggtcaggcgctgaccctggcagaagtcgaa
aaagagcaaccgttggttccgaccagcagcccgcgcgagcgctccgatcgtcctgagcgt
agcggcgaccgcgagcgtcgtgcaccgatcccgttggccgaaggccgcgcccgctgccgc
actgcgctcggtgcccgcgacggcatcgccgctcgtaacctgctcggcgccatcctcaac
gaaggcggcctggcccgtgaagatatcggccgcatccaggtgcgcgacagcttcagcctg
gtcgagctgccggaagaaggcctcgagcgcctgctaggcaaactcaaggacacccgcgta
ggcggcaagcagctcaagctgcgtcgctatcgcgaggattga
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