Stutzerimonas zhaodongensis: KQ248_19265
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Entry
KQ248_19265 CDS
T09079
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ248_19265 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzd03019
]
KQ248_19265 (rne)
03009 Ribosome biogenesis [BR:
pzd03009
]
KQ248_19265 (rne)
Enzymes [BR:
pzd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KQ248_19265 (rne)
Messenger RNA biogenesis [BR:
pzd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQ248_19265 (rne)
Ribosome biogenesis [BR:
pzd03009
]
Prokaryotic type
rRNA processing factors
KQ248_19265 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QWV16588
LinkDB
All DBs
Position
4231110..4234253
Genome browser
AA seq
1047 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF
GADRHGFLPLKEISREYFKKSPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWSAVKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALS
FIQQVMPQYASKIKLYEDPVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
REALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRSRARIFILPDDHLETPHF
EVQRLRDDSPEIITGQASYEMSPTEVEEVQPVSSTRTLVRQEAAVKTAPQRTAPAPAPIA
APAELPAPATQEPSLFKGLVKSLVGLFAGKQETPAAEVEKKPAASSRPQRNDERRSGRQQ
NRRRDSRSNRDEERKPREERAPREDRQPREERQARPPREERKPREAREPRESREPVEASE
STAQPQQQPRRERTPREDRQPREERKRELRAPLDDVAQTAPVAANGEESSERKPRPPREE
RKPRVEHVEQAEEQQNETAETAQEEQESPEGSDRPRRRSRGQRRRSNRRDRQRDANGNEI
DDEAQSNNAEVSESNAPVKSEQVAIAATAAALAANTADTDTAPTEIQIEAREAEAPAPAV
AVNNTPEATEVDKPANVPATQDSEAVTPVIAVAEPAPAVQKASEPEASATAPETSQPEAT
PAFEEPTQTATETEAPVVTASGRAPNDPREVRRRRLEQERLAKEAAEAEAKEKATPETQA
PAEMASPEIVVSEPDTDATNEQPASTANGNAEPSVARKPETPPAEPEAEQAVTELLQPEV
EAIKPATEADADAQEEADPQGLDKRQD
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcctgaagagttgcgtgtcgcactggtcgat
ggccagcgcctgttcgaccttgacatcgaatccggtgctcgtgaacagaagaaagccaac
atctacaagggtaagatcactcgcgtcgagcccagccttgaagccgccttcgttgatttc
ggtgccgatcgccacgggttcctccccctcaaggaaatttcccgcgagtacttcaagaag
tcgccggaaggccgcgtcaacatcaaagaagtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagagcgcggcaataaaggcgctgccctgaccaccttcatcagcctc
gccggtcgctatctcgtattgatgccgaacaacccgcgcgcgggcggcatttctcgtcga
attgaaggcgaagaacgcaacgaactgcgcgaagcactgaacggccttgatgtccctgcc
gatatgggcttgatcgtccgtactgccggcctcggccgttcaagtgaagaaatgcaatgg
gacctcgattacctgttgcagctatggagcgcagtcaaggaagcctctcaggatcgcgcc
gcccccttcctgatctatcaggaatccaacgtcatcattcgcgccattcgcgactacctg
cgccaggacatcggcgaagttctgatcgatagcgtcgaagcccaggacgaagcgctttcc
tttattcagcaggtcatgccgcagtacgcgagcaagatcaagctgtacgaagatcctgta
ccactgttcaaccgtttccagatcgaaagccagatcgagacggccttccagcgcgaagtg
aagctaccatccggcggttccatcgttatcgacccgactgaggcgttggtgtccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaagaaactgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacattggcggcctgatc
gtcatcgacttcatcgacatgactccggccaagaatcagcgcgccgttgaagagaaggtt
cgtgaagcactggaagctgaccgcgcacgaatccaggtcggccgcatctcgcgcttcggc
ctactggaaatgtcccgccaacgccttcgtccatcgctcggcgagaccagcggtatcgtc
tgcccgcgctgtaatggccaaggcatcattcgcgatgtcgaatcattgtcgctggccatc
ttgcgtctgatcgaagaagaagcccttaaggatcgtaccgccgaggtccgcgcccgcgtt
cccttccaggttgccgccttccttctcaatgagaagcgcaacgcgatcaccaagatcgaa
ctgcgcagccgcgcgcgcatcttcatcctgccggacgatcatctggagacgccgcacttc
gaagtgcagcgcctgcgcgacgatagcccggaaattatcactggtcaggccagctatgaa
atgagcccaaccgaggttgaggaagttcagccggtcagctcgacgcgcacactggttcgc
caggaagcggccgtcaaaaccgcaccacagcgtaccgcgcccgcgccggccccgatcgct
gcgcccgctgagctgcctgcacccgccactcaggagccaagcctgttcaaggggttggtc
aagtccctggtcggcctcttcgccggcaagcaggaaacgccagccgccgaagtcgagaag
aaacccgccgctagcagccgcccgcaacgcaacgatgaacgccgtagtgggcgccagcag
aaccgtcgccgtgattcgcgcagcaaccgcgacgaagagcgcaagcctcgtgaagagcgc
gcccctcgtgaagaccgtcagcctcgtgaagagcgtcaggcgcgccctccacgcgaagag
cgcaagccacgggaagctcgcgaaccgcgtgagtctcgcgagccagtcgaagccagcgaa
agcactgcacagccgcaacagcaaccacgtcgtgagcgcaccccacgcgaagatcgtcag
ccgagagaagagcgcaaacgcgaattgcgcgcaccgctcgatgatgtcgcgcagaccgct
ccagtcgcggcgaacggcgaagaaagttctgagcgtaagccgcggccgccccgcgaagag
cgcaaacctcgtgtagaacatgtagaacaagccgaggaacagcagaacgaaaccgcggag
accgctcaggaggagcaggagtcgccagaaggtagcgatcgcccacgccgccgctctcgt
ggccagcgtcgccgcagcaaccgccgtgatcgtcaacgcgacgccaacggaaacgaaatc
gacgacgaggcccaaagcaacaacgccgaggtaagcgaaagcaatgcgccggtgaaatct
gaacaagtcgccattgccgcaactgccgccgctctcgcagcgaacaccgcagacaccgac
accgcacccactgagattcaaattgaagcaagggaagcggaagccccagctccagctgtg
gccgttaataacacgcccgaagcaaccgaagttgacaagccagctaatgttcccgcgact
caggatagcgaagccgtgacaccggttatcgcagtagcggagccagctccggcggtgcag
aaagccagcgagcccgaagcgtcagcaacggcgcccgagacttcacagcctgaggctaca
cctgctttcgaggagccgacccagaccgcgaccgagactgaagcgccggtcgtgacggct
agcggtcgtgcacctaacgacccacgtgaggtccgccgccgccgcttggagcaagagcgt
cttgctaaagaagcagccgaggccgaagcgaaagagaaagcgacccccgaaacccaagct
ccggcagaaatggccagccctgaaatcgttgtcagcgaaccggacaccgacgcgacaaat
gagcagccagccagcacggcaaatggcaatgcagagccaagcgttgcccggaagccggaa
acaccacctgccgaacctgaagccgaacaggccgtgaccgagctgctccagcccgaagtg
gaggcgatcaagcccgccactgaagctgacgcggatgcgcaggaggaagccgatccgcag
ggcctcgacaagcgtcaagactga
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