Stutzerimonas zhaodongensis: KQ248_20995
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Entry
KQ248_20995 CDS
T09079
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pzd
Stutzerimonas zhaodongensis
Pathway
pzd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pzd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KQ248_20995 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzd03400
]
KQ248_20995 (sbcB)
Enzymes [BR:
pzd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KQ248_20995 (sbcB)
DNA repair and recombination proteins [BR:
pzd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KQ248_20995 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KQ248_20995 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KQ248_20995 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QWV16898
LinkDB
All DBs
Position
complement(4593097..4594521)
Genome browser
AA seq
474 aa
AA seq
DB search
MTSSIFWYDFETTGISPRCDRPVQVAGIRTNEALEEIGEPLNIYCRLSDDILPHPAACLV
TGITPATLAEKGLCEAEFVARLHHELAVPGTCGAGYNSLRFDDEVLRYSLYRNFFDPYAR
EWQGGNSRWDIIDLVRTAYALRPEGIVWPEEEGRVTLKLERLSAANGLEHLNAHDALSDV
RATIALARLLRERQPRLYDYLYKLRRKHAVIEQVQLLKPMVHISGRFSAARHFLSVVLPL
AWHPRNRNALIVCDLNAECAPLWEEQAQAIRERLYTRREDLGDKLPIPLKLVHMNRCPVL
APMSVLRPSDIERLGLDIQCYESRAAELRGREPEWRWKLADIYQEDAFVASSDPEQQLYD
GFFSERDRRLCEQVRNAPPFASDAAPPFDDPRLPELHFRYRARNFPECLSPAEAQQWQAF
CRQRLMVPEFGAPNTLEQFEQALLALLPSATAEQARLLQQWSLHARSLRERYML
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgacctccagcatcttctggtacgacttcgaaacaaccggtatctcccctcgctgcgat
cggcctgtgcaagtggccggtattcgcaccaacgaggcgttggaagagattggcgagccg
ctgaacatttactgtcgtttgagtgacgacattctcccgcatccagccgcgtgcctggtc
acgggcattacgcccgccacgctagcggaaaaaggcctgtgcgaggcggagttcgtggcc
cggctgcaccatgaactggctgtgccgggtacctgtggcgcgggatacaacagccttcgt
tttgatgatgaagtgctgcgctacagcctatatcgcaactttttcgacccctatgcccgc
gaatggcagggcggtaatagccgctgggacatcattgacctagtgcgcaccgcctacgcg
ttgcggccggaagggattgtctggcctgaagaggagggaagggtcacgttaaaattggag
cggctcagtgcagccaacggtcttgaacatttgaatgcacacgatgcattgtccgatgtg
cgggcgacgattgccttggctcggttgcttcgtgagcgtcaaccgcggctttacgactat
ctctacaagctacgtcgtaaacatgctgtgatcgagcaagtccagctgctcaaaccaatg
gtgcacatatcgggtcgtttttccgcggcgcgtcattttctatcggtggtactaccgctg
gcctggcatcctcgcaaccgtaacgcgttgattgtctgcgacctgaacgccgaatgtgcg
cccctttgggaggagcaggcccaggctattcgcgagcgcctttatactcgtcgggaggac
ttgggcgacaaacttccgatccccttgaaactcgttcacatgaaccgttgcccagtgctg
gcaccaatgagcgtgctgcgcccctcagatatcgagcggctaggactggatatccaatgt
tatgagtcgagagcggccgaattacgcgggcgggaacccgaatggcgctggaagcttgcc
gacatctatcaggaggatgcgtttgtggcgtcgtcggatccggagcagcagttatatgac
gggttcttcagtgagcgtgaccggcgtttgtgcgagcaagtacgaaacgcgccgccgttt
gcgagtgacgccgcgccaccgtttgatgacccgcgcttgccagagctgcattttcgctac
cgcgcacgaaactttcccgagtgtctatcgccggccgaagcccagcaatggcaagcgttt
tgtagacaacgcctgatggtgcccgaatttggcgcaccgaataccttggagcagtttgag
caagcgttgctggctttattgccatcggcaacagccgaacaagcacgtctgctgcaacaa
tggtcgctgcatgctcgcagcttgcgtgaacgttacatgctctga
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