Pseudomonas zeae: HU754_006330
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Entry
HU754_006330 CDS
T07528
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pze
Pseudomonas zeae
Pathway
pze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU754_006330 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pze03019
]
HU754_006330 (rhlB)
Enzymes [BR:
pze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU754_006330 (rhlB)
Messenger RNA biogenesis [BR:
pze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU754_006330 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QXI13027
UniProt:
A0A9E6TCE0
LinkDB
All DBs
Position
complement(1460738..1462216)
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AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVPSAPSHAPGQRNDAPQADRPVHVAAPKAEPQPAPAAPI
AAEPARSEAPKPARPRREPKPKAVVIPWKLEDFVVEPQEGKTRFHDFKLSPELMHAIQDL
GFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRA
LIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLL
DFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVM
NLAKQWTTDPAIVEIEITNVANENVEQHIYAVAGADKYKLLYNLVNDNGWERVIVFANRK
DEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS
HVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPT
HLLRAVERKRPQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggtaaaagcgaggctgagcagctcgcg
ccagttcccagtgcgccgtcgcacgcccccggtcagcgcaacgatgcgccacaggccgac
cgccccgttcacgtagcggcaccgaaggcagaaccacaacctgcaccggccgcgccaatc
gccgccgaacctgcccgcagcgaagcgccgaaaccggccagaccgcgccgcgaaccgaag
cccaaggcagtggttattccgtggaaactcgaggatttcgtcgtcgagccacaggaaggc
aaaacccgcttccacgatttcaagctgtctccagaactgatgcacgccatccaggatctg
ggttttccgtactgcacgccgattcaggcgcaggtgctgggttacaccctcgccggcaaa
gacgccattggccgtgcgcagaccggcaccggtaaaaccgccgcgttcctgatctcgatc
atcacccaactgctgcagaccccgccgccgaaagaacgctacatgggcgaaccccgtgcg
ctgatcatcgcgccgacccgtgagctggtggtacaaatcgccaaggacgccgctgacctg
accaagtacaccggcctcaacgtcatgacgtttgttggcggcatggacttcgacaagcag
ctcaagcacctcgaagcgcgtcactgcgacatcctcgtcgccacacccggccgtctgctc
gacttcaaccagcgtggcgacgtgcacctggacatggtcgaagtgatggtgctggacgag
gccgaccgcatgctcgacatgggtttcatcccgcaggtacgtcagatcattcgccagacg
ccaccgaagtccgaacgccagaccttgctgttctccgcgaccttcaccgaagacgtgatg
aacctcgccaagcagtggaccactgaccctgcgatcgtcgaaatcgaaatcaccaacgtt
gccaacgaaaacgtcgagcagcacatctatgcggtggccggtgccgacaagtacaaactg
ctctacaacctggtcaacgataacggctgggaacgcgtgatcgtgtttgccaaccgcaag
gacgaagtgcgccgcatcgaagaacgcctggtgcgcgatggcatcaacgccgcgcaactg
tccggcgatgtgccgcagcacaaacgcatcaagaccctggaaggtttccgcgaaggcaag
attcgcgtactggtcgccaccgatgtggccggtcgcggcatccacatcgacggcatcagc
cacgtgatcaacttcaccctgccggaagtcccggacgactacgtgcaccgcatcggtcgt
accggtcgtgccggcgccgacggtgtgtcgatcagcttcgccggtgaggacgactcctac
cagttgccgtccatcgaagagaagctcggtcgcaagatcagctgtgaaacgccgccgacg
catctgttgcgcgcggttgagcgcaagcgtccgcagtaa
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