Pseudomonas zeae: HU754_008615
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Entry
HU754_008615 CDS
T07528
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pze
Pseudomonas zeae
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pze03019
]
HU754_008615 (hrpA)
Enzymes [BR:
pze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU754_008615 (hrpA)
Messenger RNA biogenesis [BR:
pze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU754_008615 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
AAA_22
AAA_25
T2SSE
NACHT
ABC_tran
ResIII
SLFN-g3_helicase
AAA_30
Zeta_toxin
Nup88
Motif
Other DBs
NCBI-ProteinID:
QXI13463
UniProt:
A0A9E6TD85
LinkDB
All DBs
Position
1938399..1942310
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKKALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDTDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGLVDPVVSRELFIREGLVRGEIQSKAKCLTANKQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRINSQKNPQLLIMREEDVLARE
ASEVTARDYPDTLHIGDLELALTYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEAEQGVEGHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE
AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGQTELGLLYRELGRVDALVEDILLASLDSCILEGEDPLPRDGAGLAAL
AERKRGNWTEHAERVARLTLEILKLWHSLQKRFKGKIDLAQAVALNDIKQQINNLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWGQYQTRAAKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctccatcgacaaactgctgaagaacctcgatcacgccatgctc
gccgaccgtcaccggctgcggcgacagttgcttgagctgcgcaagaaacccgacgaggcc
aaactggcccagtgggtgacgcgcatgcaggcgtcctgtgatcaggtgctggcccgccgt
gccagcctgccggtgattcgttacgacgacagtctgccgattgcggccaagcgcgacgag
atcaagaaggcgctggaaaagcatcaagtgctgatcatcgccggcgaaaccggctcgggc
aaaaccacccagttgccaaaaatctgtctggaaatcggtcgcggtcagcacggtctgatc
ggccacacccaaccacgtcgaatcgctgcgcgcagcgtcgccagccgggtcgccgaagaa
ctcgctacgccgctcggtgcgctggtcggctatcaggtgcgtttcgaggatcaaagcgat
tccaacaccctgatcaagctgatgaccgacggtattctgctggcggaaacccagaacgat
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttcctgctcggctacctgaaaaccctgctgccgcgtcgcccggacctgaaagtc
atcatcacttcggcgaccatcgatctggagcgcttctccaagcacttcgacgatgcgcca
attgtcgaagtctccggccgcaccttcccggtggacacctggtatcgcccgctgaccctg
gagcaggacgaagagggcaaccgcgtcgaggatgacctgacggtggatcaagcgatcctc
gcgacccttgacgaaatcgccgcttacgagcgcagcgaacgccgcagtccgggagacgtg
ctggtatttctgcccggcgagcgcgagattcgcgacgccgccgacatgctgcgcaaggcg
caactgaaacacacggaaatcctgccgctgtacgcgcgcttgtcgccggccgaacaacag
cggattttccagtcgcacccgggccgtcgcgtggtgctggcgaccaacgttgccgagacc
tcgttgactgtgccgggcattcgttacgtgatcgacagcggcaccgcgcgcatcagccgt
tacagctaccgtgccaaggtccagcgtctgccgatcgaggcgatttcccaagccagcgcc
aaccagcgtaaaggtcgttgcggacgggttgagccgggcatttgtattcggctgtacagc
gaagaagattttaacgggcgcccggaattcaccgatccagagattctgcgcaccaacctc
gctgccgtgattctgcagatgctgcatctacgtctcggcgagatcaccgcattcccgttc
atcgagccgccggatggcaaggcgatcagcgacggtttcaacctgctgcaagaactctcg
gcggttgaccgcaacagtcagctgaccccgctcggtcgccaactggcgcgcctgccggtc
gacccgcgcatgggccgtatgctgcttgaagcagccaagctcggcagtttgcaggaagtg
ctgatcgtcgccagtgcgatgtcgattcaagacccgcgcgagcggccgccggagcgtcag
caagccgccgatcaggcccacgcgcaatggaaggacaccgattcggacttcgccggactg
gtcaatctgtggcgtggttttgaagagcagcgccaggcgctgaccgccagcccgttgcgc
aactggtgccggaagaatttcctcaattacctgcgtctgcgcgagtggcgcgactcgcat
cggcagttgagcctgatctgccgcgacatgcagctgagcctcaacaaagagccggcggat
tacccgaaactgcacaaagcggtgctggtcggcttgctcagccagatcggtcagaaaacc
gaggatggcgattacctcggcgcgcgtcagcgacgtttctggattcacccgtcgtcgggc
ataggcaagaagcgcccgcagtggctgatgaccgccgaactggtggaaaccaccaagctt
tatgctcgcatggtcgccaagatcgacgccgactggatcgagccgctggccgggcacttg
atcaagaaaaaccacttcgaaccgcattgggaaaagaagcgcggccaggtcgtggcctac
gagcagatcactctgttcgggctgatcgtggtcggccgccggccggtgcattacggtctg
gtggatcccgtggtttctcgcgagttgttcattcgcgaaggcttggtgcgtggcgagatt
caatcgaaagccaagtgcctgaccgccaacaaacagttgctcgaacagctcgacgaactg
gaagccaaggcccgtcgtcgcgacattctcgccgatgaagaaaccttgtacgcgttctac
gacgcgcggttgccggcggagattcaccagaccgcgaccttcgacagttggtaccgcatc
aacagccagaagaatccgcagttgttgatcatgcgcgaagaagacgtgctggctcgcgaa
gccagtgaagtcaccgcgcgggattacccggacacgctgcacatcggcgatctggaactg
gcgctgacttatcacttcgagcccaatcatccgcgcgacggcgtgaccctgcgcgtgccg
gccccgctgttgccgatgctgccaccggaacgcctggaatggctggtgccggggatgatc
gaggccaagtgcatcgcccttgtgcgcaacctgccgaaggccttgcgcaagaacttcgtg
ccggtgccggacttcatcaaagccgcgctgcaacgcatgacctttgccgagggttcgttg
ccgcaagcgctcggtcgcgaactgctgcgcatgactggcgcgcgggtcagtgacgaggcg
tgggccgaagccgagcaaggcgtcgaggggcatctgcggatgaacctggaaattgtcgac
ggccaaggcaaattcctcggcgaaggtcgcgatctggccgagctgaccgcacggtttgcc
gaagccagtcaggccgcgctggcggtgccgcagagtgcgaaaagtcagcaaccggtggag
gccaaggtcttcgccccggtagcagaaaagactcaacagaagatcgccgggctgtcgatg
acggtatatccggcgctggttgaagagggcggcacggtcaaggaggggcgcttctcgacc
ccggccgaagccgaattccagcatcgtcgcgccttgcagcggttgttgatgcagcaactg
gcggaaccggccaagttcctgcgtggcaagttgccggggcagactgagctgggcttgctc
tatcgcgagttgggccgggttgatgcgctggtcgaagacattctgctggcgagcctcgac
agctgcattctcgaaggcgaagacccgctgccccgcgacggcgccggtttggcggcactg
gccgagcgcaaacgcggcaactggactgaacacgccgaacgcgtggcgcgcctgacgctg
gaaattctcaagctgtggcacagcctgcaaaagcgcttcaagggcaagatcgatctggcc
caggccgtggcgctcaatgacatcaagcagcaaatcaacaatctggtgtatccggggttt
gtccgcgaaacgccgatgcagtggcttaaggagttgccgcgttacctgaaagcggtcgag
cagcgcttcgaaaagctcggcgcgcaggtgcagaaggatcgcgtctggagcggcgaactc
gccggcctctgggggcaataccagactcgcgcggcgaaacatgcccaggaaggcaaacgc
gatccgcagcttgagctgtatcgctggtggctggaggaataccgggtctcactgttcgcc
cagcagttggggacgaaagtaccgatttccgacaaacgccttaacaagcagtggacccag
gtcgagccctga
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