Pseudomonas zeae: HU754_021995
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Entry
HU754_021995 CDS
T07528
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pze
Pseudomonas zeae
Pathway
pze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU754_021995 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pze03019
]
HU754_021995 (rne)
03009 Ribosome biogenesis [BR:
pze03009
]
HU754_021995 (rne)
Enzymes [BR:
pze01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HU754_021995 (rne)
Messenger RNA biogenesis [BR:
pze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU754_021995 (rne)
Ribosome biogenesis [BR:
pze03009
]
Prokaryotic type
rRNA processing factors
HU754_021995 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXI10465
UniProt:
A0A9E6NLQ9
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All DBs
Position
4994787..4998026
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAAAAPAPVATPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERAPREAREVREPREARTEAPVARE
ERAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAVPAAVADVAVTAEERPTRQPR
EERAPRPPREERQPRAEQAAAAVAEEEVNTNEEQLPEDGSENAEGDRPRRRSRGQRRRSN
RRERQRDANGNVIEGSEESEAGENAEAPSTADLAAGLAVTAAVASTVISAPAEAQAHEQA
ERATAAVQETAPVEAPVVEATTPVEVVAAPEVEVAPVQETLPQVEPAPVVAAEPVVETVA
ETVTETVREVREEQTAFNWVAEPTVAETPAPVVEAPVVEAPVFETPVFEERKAAEPAPVV
EAAVVEAPVVTEAPAPVVEAPAPVSALTPSGRAPNDPREVRRRKREEERLQKEAELAAAA
APVAAEPAVVAEVVEAAPAPVTEEAVVESVIAEAPRSVQDAVEQHQEAEEKEHEPKPLV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgccactcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggtatctctcgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggtctggtcgcaccagcc
gacatgggtctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggaccgctcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgta
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtt
gaactgccttccggtggttccatcgtgatcgatccgaccgaagccctggtgtcgatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgctctgcagaccaac
cttgaagctgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcattgacatgacccctgccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtgcgcgcccaggtg
ccgatcccggtcgctgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcatcattctgccgaacgaccacctcgaaaccccgcatttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgctgccgctgctgaagtcgaagaagttcagccagccgctgcgacccgcaccctg
gttcgccaggaagccgcggtcaagactgctccggcccgtgccaacgctccggttccgacc
gaagtcgccgccccggccgctgctgcaccagctccagtcgctacaccggagccaagcctg
ttcaaaggcctggtgaaatcgctggtcagcctgttcgccaccaaagaagagccagccgct
ccggttgtggttgaaaaaccagccgccgaacgtccggcccgtaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgtaatggtcgccgcgatgaagaacgcaagccacgcgaa
gaacgtgctccacgtgaagaacgtgcgccacgcgagccgcgcgaagagcgcgcgccacgt
gaagcccgtgaagtccgcgaaccacgtgaagctcgtaccgaagcgccagttgcccgcgaa
gaacgtgcaccacgcgctccgcgtgaagaacgtgcaccacgtgcgccgcgcgaagaccgc
aagccacgcggcgagcgtgaagagcgtgtgcgtgaactgcgcgagccactggacgccgtt
ccagccgctgtagctgacgttgccgttaccgctgaagaacgcccgacccgtcagccacgt
gaagaacgcgcaccgcgtccgccacgtgaagagcgtcaaccgcgtgccgaacaggccgct
gctgccgtcgctgaagaagaagtgaacaccaacgaagagcaactgccggaagacggttcg
gagaacgccgaaggcgatcgcccacgtcgtcgttcgcgcggtcagcgtcgtcgcagcaac
cgtcgtgagcgtcagcgtgatgccaacggcaacgtgatcgaaggttcggaagaatccgaa
gccggcgaaaacgctgaagcgccaagcaccgccgatctggctgctggcctggctgtgacc
gccgctgttgccagcaccgtgatcagtgcaccggctgaagctcaagcccacgagcaagct
gaacgcgccaccgcggctgttcaggaaaccgctccagtggaagcgccggttgttgaagcg
actactccagtagaagtggttgctgctccggaagtcgaagtggctccagttcaagagacc
ctgcctcaggtagagccagcgccagttgtggctgcggagccggtggttgaaaccgtcgca
gaaaccgtaaccgaaaccgtgcgtgaagttcgcgaagagcagactgccttcaactgggtt
gccgaaccgactgttgctgaaaccccagcgccagtggtggaagcaccggttgttgaagcg
ccagtgtttgaaaccccagtgtttgaagaacgtaaggctgccgaaccagcacctgtcgtt
gaagcagcggttgtcgaagcacccgtggtgaccgaagcgccagccccggtggttgaagct
ccagcaccggtcagcgctctgacgccaagcggccgcgcgccaaacgacccacgtgaagtg
cgtcgtcgcaagcgtgaagaagagcgtctgcagaaggaagccgaattggctgccgctgct
gcgccagtcgctgccgagccagccgtggttgctgaagtggtcgaggcagctcctgccccg
gtgactgaagaagctgtggttgagtcggtgattgcagaagcaccacgctccgttcaggac
gcggtcgagcagcaccaagaggccgaggaaaaagaacacgagcctaaaccactcgtgtaa
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