Pseudomonas zeae: HU754_028210
Help
Entry
HU754_028210 CDS
T07528
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pze
Pseudomonas zeae
Pathway
pze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU754_028210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pze03019
]
HU754_028210
Enzymes [BR:
pze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU754_028210
Messenger RNA biogenesis [BR:
pze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU754_028210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXI11622
UniProt:
A0A9E6NQA0
LinkDB
All DBs
Position
6399045..6400931
Genome browser
AA seq
628 aa
AA seq
DB search
MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTIEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERPARQQKPREGTPAREQRPSQPPRAAADRAPDEFLDDDIDN
FGNRVDYVPKPAPAGGRGRRPGAPAQGAGAGSGAPRGGQSQGRQNGPRNSNGSSTGTPPA
KRSGGPRNGAPRDGQSGRRDDSVSSSRNRRPARDDQPRSEPAVQNPRSNGPKIMHKESKA
DRFPTPEQLDQLPSRPRGEKPALLTRNR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccgacccgcgaactcgcggcccaggttcacgagagcttcaag
atctacgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggcgtcgacgtgctcgtcgcctgcccgggtcgattg
ctcgatctgtgcggccagggcagcgttgacctgtcccacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggtttcgtgcacgacgtgaagaaagtcctcgcgcgc
ctgccgtccaagcgtcagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtgttccgtctgccggccagccacaagcgtgcgctgctg
gcgcacctgatcaccgccggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggcctgccggctgtagcgatccac
ggtaacaagagccagaacgcgcgcaccaaagcgctggccgacttcaaggccaaccaggta
cgcatcctggttgcgaccgacatcgccgcgcgcggtctggacatcgatcagttgccacat
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggcgatttcgctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gattcgagcaccattgaagccgagaagccggaagtgcgtgaacgtccggacgtgcgtaac
ccgcgcaatccacgtggcccacgcggcgacggcccgaatggcggcggcggtggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggtgaacgtggcgagcgc
cctgcccgtcagcaaaagccgcgcgaaggcacccctgcccgcgaacagcgcccgagccaa
ccgccacgtgcagcggctgatcgtgccccggacgagttcctcgacgacgatatcgataac
ttcggtaaccgcgttgattacgtaccaaaaccagcccctgccggcggccgtggccgtcgt
ccaggcgcaccggctcaaggtgcaggcgcaggttcgggcgcaccacgtggcggtcagtcg
cagggtcgtcagaacggtccgcgcaacagcaacggttcgagcaccggcaccccgccagcc
aaacgcagcggcggcccgcgcaacggcgcaccgcgtgatggtcagtcgggtcgtcgcgac
gactccgtctcgtcctcgcgcaatcgtcgtccggcccgtgacgatcagccacgcagcgag
ccagccgtgcagaacccgcgcagcaacggcccgaagatcatgcacaaggaatcgaaagcc
gaccgcttcccgacgcctgagcaacttgatcaactgccaagccgcccgcgtggcgaaaaa
ccagcattgctgacccgcaatcgctga
DBGET
integrated database retrieval system
