Paracoccus zhejiangensis: CX676_16800
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Entry
CX676_16800 CDS
T05233
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pzh
Paracoccus zhejiangensis
Pathway
pzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CX676_16800 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzh03019
]
CX676_16800 (rnr)
03016 Transfer RNA biogenesis [BR:
pzh03016
]
CX676_16800 (rnr)
Enzymes [BR:
pzh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CX676_16800 (rnr)
Messenger RNA biogenesis [BR:
pzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CX676_16800 (rnr)
Transfer RNA biogenesis [BR:
pzh03016
]
Prokaryotic type
tRNA degradation factors
CX676_16800 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
RNase_II_C_S1
MR_MLE_C
Motif
Other DBs
NCBI-ProteinID:
AUH65601
UniProt:
A0A2H5F220
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All DBs
Position
3468575..3470824
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AA seq
749 aa
AA seq
DB search
MAQIPSKQQILDWVADHPDANSKRDIAKAFNIKGAERIELKRLLKELEAEGHLERRRRHY
QDTHQLPPVTVVRLESPDGNGDLWARPLEWQGEGPEPRILYKPREADSALGPGDRILARL
IEVQGEDYQYDARLIRKITLAPQKIVGIFRKEAEGGRIVPIDKGQDREWRVRPDATHGAQ
PGELVEAEQVGPKNRLGLPYARVTERLGDPSAPRAVSLIAIHQHGIPDDFPEQVLAEADA
AKPATMKGREDLRPLPLVTIDPADARDHDDAVAAMIEEDGGATIWVAIADVAHYVRPGSA
LDREAWKRGNSTYFPDRVVPMLPDALSGDLCSLHEGVDRAVIAVRMRLDAQGNKVSHSFH
RGLMNSRASLAYEQAQAAADGNPDDQTAPLVDEVIKPLWHAYDLLKQARARRQPLDLDLP
ERRIELTPDGRVKSVNFRDRFDAHRLIEEFMVLANVAAAEELTRRQRPLLFRVHEEPTLE
KIDALREVAQASGFTLAKGQVLHTHHLNRLLAQSEGTDFDELINITTLRSMTQAYYHPEN
FGHFGLALKSYAHFTSPIRRYSDLVVHRALITAHGWGKDGLSDAEIERLPETATHISETE
RRSMAAERDTTDRYLAAFLAERVGSEMTGRINGIQRFGAFIRLDETGADGLLPIREIGNE
YFHYDPDAQMLIGSETGIEIGIGQRVTVRLTEAVPTTGGLTLELVELEGRSLSQGPRKGG
KRGRPLRRKPTQARLSEVKRAAKRKRKRP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcacagatcccctcgaaacagcagatcctcgactgggtggccgaccacccggacgca
aattccaagcgcgacatcgccaaggccttcaacatcaagggcgccgagcgcatcgagctg
aagcgcctgctgaaggagctggaggccgagggccatctggaacgccgccgccggcactac
caggacacgcatcagttgcccccggtcacggtcgtgcggctggaatcccccgacggcaat
ggtgatctctgggcgcggccgctggaatggcagggcgaggggccggaaccgcgcatcctc
tacaagccgcgcgaggctgacagcgcgctggggccgggcgaccgcatccttgcccggctg
atcgaggtgcagggcgaggattaccagtatgacgcaaggctgatccgcaagatcaccctc
gcgccgcagaagatcgtcggcatcttccgcaaggaagcagagggcggccggatcgtcccg
atcgacaagggccaggaccgcgaatggcgggtgcgccctgacgccacccatggcgcgcag
ccgggggaactggtcgaggccgagcaggtcggcccgaagaaccgccttggcctgccctat
gcgcgggtgaccgagcgtctgggcgatccctccgccccgcgcgccgtcagtctgatcgcg
atccaccagcacggcattcccgacgatttccccgaacaggtgctggccgaggccgatgcc
gccaagcccgccacgatgaagggccgcgaggatctgcgcccgctgcccttggtcaccatc
gaccccgccgatgcccgcgaccatgatgacgcggtcgcggcgatgatcgaggaagacggc
ggcgcgaccatctgggtcgccatcgccgatgtcgcccattacgtccgccccggctcggcg
ctggaccgcgaggcgtggaaacgtggcaattcgacctatttccccgaccgggtggtgccg
atgctgccagatgcgctgtcgggcgatctctgctcgctgcacgagggcgtcgaccgggcg
gtgatcgcggttcggatgcggctcgatgcgcagggcaacaaggtctcgcacagcttccat
cgcgggctgatgaacagccgcgcctcgctggcctatgaacaagcgcaggcggctgcggac
ggcaatcccgatgatcagaccgcgcccctggtggatgaggtcatcaagcccctctggcac
gcctatgacctgctgaagcaggcccgcgcgcggcgtcagccgctggatctggacctgccc
gaacgccggatcgagttgaccccggacgggcgggtgaaatcggtgaacttccgcgaccgc
ttcgacgcccaccggctgatcgaggagttcatggtgctggccaatgtcgccgccgccgag
gaactgacccgccgccagcgtccgctgctgttccgcgttcacgaggaaccgacgctggaa
aagatcgacgccctgcgcgaggtggcgcaggcatcgggctttacgctggccaaggggcag
gtgctgcacacgcatcatctgaaccggcttctggcgcagtccgagggcacggatttcgac
gagttgatcaacatcaccaccctgcgctcgatgacccaggcctattaccatcccgagaat
ttcggccatttcggtctggcgctgaaaagctatgcccatttcaccagcccgatccgccgc
tattccgatctggtcgtccaccgggcgctgatcaccgcgcatggctggggcaaggacggg
ctcagcgatgccgagatcgagcgtctgcccgagaccgccacccatatcagcgagaccgag
cggcggtcgatggcggccgagcgggatacgaccgaccgctatctcgccgccttcctggcc
gagcgtgtcgggtccgagatgaccggccgtatcaacggcatccagcgcttcggtgccttc
atccggctggatgagaccggggccgacgggctgctgccgatccgcgagatcggcaatgaa
tatttccactatgatcccgatgcgcagatgctgatcggctcggaaaccgggatcgagatc
ggcatcggccagcgcgtcaccgtgcggctgaccgaggcggtgccgaccaccggcgggctg
acgctggaactggtggaactggaaggccgcagcctgtcgcagggcccccgcaagggcggc
aagcgtggccggcccttgcggaggaagcccacgcaggcacggctgtccgaggtgaagcgc
gcagccaagcgcaagcgcaagcgcccctga
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