Candidatus Phytoplasma ziziphi: CWO85_00520
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Entry
CWO85_00520 CDS
T05675
Name
(GenBank) DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pzi
Candidatus Phytoplasma ziziphi
Pathway
pzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWO85_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzi03019
]
CWO85_00520
03009 Ribosome biogenesis [BR:
pzi03009
]
CWO85_00520
Enzymes [BR:
pzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWO85_00520
Messenger RNA biogenesis [BR:
pzi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWO85_00520
Ribosome biogenesis [BR:
pzi03009
]
Prokaryotic type
rRNA helicases
CWO85_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
Cas3-like_C_2
Herpes_TK
Motif
Other DBs
NCBI-ProteinID:
AYJ01024
UniProt:
A0A660HLV9
LinkDB
All DBs
Position
82199..83860
Genome browser
AA seq
553 aa
AA seq
DB search
MSILFKDLNLLKQIQDALEELNFATPTPIQALVIPEIIEGHDIIAQSQTGTGKTFSFAIP
IIEKIDPKVKKVQSLILCPTRELALQVFLEIQKLLKFYSEMKTIVVYGGESYIKQFQELD
KKPQIIIATPGRIIDLLERKKVELSSVKILTLDEADEMLKMGFQQAVETILSKIPAEKQT
ILFSATMPDAIREIAFKYQKNPKILKAKQDQIVVKSIEQFYFVIKEFDKNKLLVRLLDQK
NPDSVIIFANTKRDVDTILNYLQDKDFLVDAIHGDLKQNQRQYVMNNFRKKNIKILVATD
VAARGIDISDIKMVINYDLPHEEEVYVHRIGRTGRAGKTGSAYTFVGLRKVFQFKKLMNY
LKETITYLNVPTVEAIQQEQNKFFEEQILHLIQENQKTETKENPFIDTLLKDKEPKEIIS
ALLQHLAPKNKNYEHISEPKIWKGNDFKNSYSKSNNFSNDFNKTNNNYNNSYNKFNKKPM
TELIINLGKNDGINPSLLLKLLKDKFNIYSKNIGNIKHFHNKTVFEIPMNLAKQVQSQNN
VSYNNKILQIQMK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttattcaaagatttaaatttattaaaacaaatccaagacgctttagaagag
ttaaattttgcgactcctacaccaattcaagctttagttattccagaaattatagaaggg
cacgatataatagctcaatcacaaacaggaacaggtaaaaccttttcttttgctattcct
attattgaaaagattgaccctaaagtaaaaaaagttcaatctttaatattatgtcctaca
agagaattagcattacaagtatttttagaaattcaaaaattattaaaattttattctgaa
atgaaaacgattgttgtttatggtggagaaagttatataaaacaatttcaagagttagac
aaaaaaccacaaattattattgctactcctggaagaataatagatctattagaaagaaaa
aaagtagaattatcatcagtaaaaatcttaactttagatgaagctgatgaaatgttaaaa
atgggttttcaacaagctgtcgaaactattttatctaagattccagcagaaaaacaaact
attttattttcggctacaatgcctgatgctattcgtgaaatagcttttaaatatcaaaaa
aatcctaaaattttaaaagctaaacaagatcaaattgttgtcaaatcaattgaacaattt
tattttgttataaaagaatttgataaaaataaacttttagtaaggcttttagatcaaaaa
aatcctgattcagtaattattttcgctaatactaaaagagatgtagatacgattttaaat
tatttacaagataaagattttttagtagatgctattcatggtgatttaaaacaaaaccaa
agacaatatgtcatgaataactttagaaaaaaaaatattaaaattttagttgctaccgat
gttgctgctagaggtatagatatttctgatattaaaatggttattaattatgatttgcct
cacgaagaagaagtttatgttcacagaatcggtagaacaggaagagctggaaaaacaggt
tcagcttatacttttgtcggtttaagaaaagtttttcaattcaagaaactaatgaattat
ttaaaagaaacaataacttatttaaatgttccgacggtagaagcgattcaacaagaacaa
aataaatttttcgaagaacaaattttacatttaatacaagaaaatcaaaaaacagaaaca
aaagaaaatccttttattgatactttattaaaagacaaagaacctaaagaaattatttct
gctcttttacaacatttagctccaaaaaataaaaattacgaacatatatcagaaccaaaa
atttggaaaggaaatgattttaaaaattcttattctaaatcaaataatttttcaaatgac
tttaataaaacaaataataattacaacaacagttacaataaatttaataaaaaaccaatg
acagagttaattattaatttaggaaaaaatgacggtatcaatccttcattgcttttaaaa
ttattaaaagataaatttaatatttatagcaaaaatattggaaatataaaacattttcat
aataagactgttttcgaaattcctatgaatttagctaaacaagttcaatctcaaaataat
gtttcttataataataaaattttgcaaattcaaatgaaataa
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