Candidatus Phytoplasma ziziphi: CWO85_00645
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Entry
CWO85_00645 CDS
T05675
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pzi
Candidatus Phytoplasma ziziphi
Pathway
pzi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pzi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CWO85_00645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzi03400
]
CWO85_00645
Enzymes [BR:
pzi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CWO85_00645
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CWO85_00645
DNA repair and recombination proteins [BR:
pzi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CWO85_00645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Ribosomal_S13
C1_2
Motif
Other DBs
NCBI-ProteinID:
AYJ01048
UniProt:
A0A660HLY5
LinkDB
All DBs
Position
complement(118339..119157)
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AA seq
272 aa
AA seq
DB search
MPELPEVEITIRNLRKKIIGSRIDKIEVFHQPSLQSIHNLNNLEQKTFVDIERKGKFLLF
FLSSDWVLVGHFRMEGKIYIHALEECKTIHKYENFRIFLNNHKIFRYYDFRKFGRFHLYK
KETYLEESGLNQLAQDPFSIKALTLFNKINKKKTVIKKILLDQRVISGIGNIYASEILFL
AKIHPETKTDSLTLQQIEIIISKAKKILKNAISYGGTSISSFEALGVKGSYQHQLLVYKK
DKENCSLCKNKIHKIKIGGRSSYFCSQCQKHN
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtagaaattacaattcgtaatttaagaaaaaaaataattggt
tctcgaatagacaaaatagaagtttttcaccaaccttcattacaaagtattcataatttg
aacaatctcgaacaaaaaacttttgtagatatcgaaagaaaaggtaaatttttattattt
tttttaagctctgattgggttttagtaggacattttcggatggaaggcaaaatatatatt
cacgctttagaagaatgtaagacaatccacaaatatgaaaattttcgaatatttttaaat
aatcataaaattttccgatattatgattttagaaaatttggacgttttcatttatacaaa
aaagaaacatatttagaagaaagcggattaaatcaattagcccaagatccgttttcaata
aaagctttaactctttttaacaaaattaacaaaaagaaaacagtaattaaaaaaatttta
ttagatcaaagagtaatatcaggaattggtaatatttatgctagtgaaattttatttttg
gctaaaattcatcctgaaacaaaaacagattctttaactttacaacaaatagaaatcatt
atctcaaaagcaaaaaaaatattaaaaaatgcaatttcttatggcggcacttctattagt
agttttgaggctttgggagtgaaaggttcttatcaacaccaactcttagtttataaaaaa
gacaaagaaaattgttctctatgcaaaaataaaattcacaaaataaaaataggaggaaga
agttcttatttttgttctcaatgtcaaaaacataattaa
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