Candidatus Phytoplasma ziziphi: CWO85_02950
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Entry
CWO85_02950 CDS
T05675
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pzi
Candidatus Phytoplasma ziziphi
Pathway
pzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWO85_02950 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzi03019
]
CWO85_02950 (rny)
Messenger RNA biogenesis [BR:
pzi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWO85_02950 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AYJ01436
UniProt:
A0A660HNS0
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All DBs
Position
614370..615935
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AA seq
521 aa
AA seq
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MNHIDNSFLFVLFFIFAGLVIFIYFLSKKKISEKIRQTDESIEKKILKSQLLSAQIISET
EKKISLLKKETENDLNQRRNIIINLEEKIIHKEELLASRFKYLHEKEEFLYNKEQKININ
KKYLEELQNKIEKIMIQQQNKLEQISSLTQIEAREIILKQVKENSYQEIINYEREQEKEY
KFKIKNKAKNLLILTMQKLSRDVVYEHNISMIFLEQDSLKGRIIGKEGRNIKAFEVVTGV
DLIIDDNPNTVILSCFDPIRREIAKRTLEALIIDGRITPSSIEKTFLKKSEEIDEFIQEI
GEEAVYEAKIGFIDEELVKLLGKLHFRTSYGQNVLKHSLEVSFLAGCLAAETGENEIIAR
KAGLLHDIGKALDYQTEGSHVTIGVELAKKYKESLEVIDAIASHHEDQESTTLIAVLVSI
ADTISSARPGARKDSIENYIQRITQLENIADSVEGVSKSYAIRSGREIRVIVKSEEVDDL
NTFLIAKQIRKKIQKNIHYNGFIQITVLRELRVIDIAEINN
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatattgataacagtttcttgtttgttttattttttatttttgctggattagta
atttttatatattttttgtctaaaaaaaaaataagtgaaaaaataagacaaacagacgaa
agtattgaaaaaaaaatattaaaatctcaattactttcggctcaaattatttcagaaacc
gaaaaaaaaatttctttattaaaaaaagaaacagaaaacgatttaaatcaaagaagaaac
ataattattaatttagaagagaaaattattcataaagaagaattattggcttctagattt
aaatatctacatgaaaaagaagaatttttatataataaagaacaaaaaataaatattaat
aaaaaatatttagaagaactacaaaataaaatcgaaaaaataatgatacaacaacaaaac
aaattagaacaaatttcttctttgactcaaatagaagccagagaaattattttgaaacaa
gttaaagaaaattcttatcaagaaataataaattacgaaagagaacaagaaaaagaatat
aaatttaagatcaaaaataaagcaaaaaatttattaattttgacaatgcaaaaattatct
agagacgttgtttatgaacataatattagtatgatttttttagaacaagatagtttaaaa
ggaagaattatcggcaaagaaggacgtaatataaaagcttttgaagttgttaccggtgta
gatttaataatagatgataatccgaatacagttattttaagttgtttcgatcctattaga
agagaaattgcgaaaagaactttagaagctctaattattgatgggagaatcactccttca
agtattgaaaaaacatttttaaaaaaatccgaagagattgatgagtttatacaagaaata
ggcgaagaagcagtttatgaagctaaaataggatttattgatgaagaattagtaaaatta
ttaggtaaattgcattttagaactagttatggccaaaatgttttaaaacattctttagaa
gtatcttttttagcaggatgtttagctgcggaaacaggagaaaatgaaattatagctaga
aaagctggtcttttacatgatattggtaaagctttagattaccaaacagaaggaagtcat
gttacaatcggagttgaacttgctaaaaaatataaagaatctttagaagtaatagacgcc
atcgcttcacatcatgaagatcaagaatcaaccactttaatagctgttttagtttcgatc
gcggatacaattagttctgctagaccaggagctagaaaagactcaattgagaattatatt
caaagaataactcaattagaaaatattgctgatagcgttgaaggggtatcaaaatcttat
gccatcagatctggcagagaaataagagttattgttaaatctgaagaagttgatgattta
aatacttttttaatagctaaacaaattagaaaaaaaattcaaaaaaatattcattataat
ggttttattcaaattactgttcttagagagttgagagtaattgatatagctgaaatcaat
aattaa
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