Providencia zhijiangensis: QS795_016050
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Entry
QS795_016050 CDS
T09966
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pzj
Providencia zhijiangensis
Pathway
pzj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QS795_016050 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzj03019
]
QS795_016050 (rnr)
03016 Transfer RNA biogenesis [BR:
pzj03016
]
QS795_016050 (rnr)
Enzymes [BR:
pzj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QS795_016050 (rnr)
Messenger RNA biogenesis [BR:
pzj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QS795_016050 (rnr)
Transfer RNA biogenesis [BR:
pzj03016
]
Prokaryotic type
tRNA degradation factors
QS795_016050 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WPA91958
UniProt:
A0ABZ0N0Q2
LinkDB
All DBs
Position
complement(3508267..3510747)
Genome browser
AA seq
826 aa
AA seq
DB search
MSNDPFQEREAEKYESPIPSREFILDLLSKRTAPANREEIAQLLNLSTEDELEALRRRLR
AMERDGQLVFTRRKCYALPERIDLLKGKVIGHRDGYGFLRVEGKKEDYYLSQDEMKRALH
GDVILAQPYGQDRKGRTEVRVVRVLEPRNNQIVGRYFIEAGMGFVVPDDGRLSFDILIPK
DKQCGARMGNVVVVELETRPQRRSQAVGNIVEVLGETMGTGMAVEIALRTHEIPHSWPPQ
VTKQVADYSETVPEAAKKGRVDLRDLPLVTIDGEDARDFDDAVYCAPKKGGGWRLWVAIA
DVSYYVRPQTALDTEAHSRGNSVYFPSQVVPMLPEVLSNGLCSLNPGVDRLCMVCEMTVS
ASGKLSSYKFYEAVMSSHARLTYTKVWKMLQGDEELREHYKALVPHIEHLHQLYKALDAA
RIERGAISFESEEAKFIFNAERRIERIEPVERNDAHKLIEECMILANIAAARFVEKNEEP
ALYRVHDRPKEESVMNLRSVFSELGLTLPGGMKPEPKDYAQVMNEVAERPDHELLQTMIL
RSMKQAIYDPENRGHFGLGLKSYAHFTSPIRRYPDLTLHRGIKYLLAKEHGHGDKRWTET
GGWHSDMDSMLQLGEHCSLTERRADEATRDVADWLKCDFMQDQVGQVFTGLITSVTGFGF
FVRLNDLFIDGLVHISTLDNDYYRYDAVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERT
IDFALISTTRKAKNPGKTTRDKMKKEVKNATRSARRKGDVSKEKNFEPDSAFRRSEKKGK
KDSKDAKPEGKGNGKAKSKKPSDKTKKISAKLKAKRVAKKSQKQEG
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgatccttttcaggaaagagaagcagaaaaatacgaatccccaattccgagt
agagagtttattttagatctcttatctaagcgcacagcccctgcaaaccgtgaagaaatt
gcacagttactcaacctctctacggaagatgaattggaagcattgcgtcgtcgcttacgt
gcgatggaacgtgatggacagttagttttcactcgccgcaaatgttatgcattaccagaa
cgtattgacctattaaaaggtaaagttattggccaccgtgatggctatggtttcttgcgt
gtcgaaggtaaaaaagaagattactacttatctcaagatgagatgaagcgcgctttacat
ggtgatgtgattttggctcaaccttatggtcaagaccgtaaaggacgcaccgaagtgcgt
gttgtacgtgtattagagccgcgcaataaccaaattgttgggcgctattttattgaagcg
ggaatggggtttgtcgttcctgatgatggtcgtttaagtttcgatattttaattcctaaa
gacaagcaatgtggcgcccgtatgggtaacgtggtggtggttgaattagaaactcgccca
caacgccgctctcaagctgttgggaatattgtcgaagtactcggtgaaaccatgggtacg
ggcatggcggtagaaatcgcattacgtactcatgaaattccgcactcttggccgccacaa
gtgacaaagcaagtggctgattacagtgaaacagttcctgaagctgcgaagaaagggcgt
gtggatcttcgcgatcttccactcgttaccatcgatggcgaagatgctcgtgacttcgat
gacgccgtttactgtgcaccgaaaaaaggtggcggctggcgtttatgggtggcgattgcc
gatgtgagctattatgttcgcccacaaactgcactggatacggaagcccatagtcgtggt
aactcggtctacttcccatcccaagttgttccaatgctaccggaagtgctgtctaacgga
ttatgttcactcaacccaggcgtagatcgtctgtgtatggtgtgtgaaatgacggtttcg
gcatccggaaaactctcttcatataaattctatgaagcggtgatgagctcccacgcgcgt
ttaacttacaccaaagtgtggaaaatgctgcaaggggatgaagagctacgcgagcactac
aaagcgttagtgcctcatatcgagcatttacaccaattatacaaagcgttagatgcagcg
cgtattgagcgtggcgctatctcgtttgaatctgaagaagccaaatttatcttcaatgcg
gaacgccgtattgagcgtattgagcctgtagaacgtaatgatgcacacaaattaattgaa
gagtgcatgattttagctaatattgcggcggcgcgatttgttgagaaaaacgaagagcct
gccctataccgcgtgcatgaccgtccgaaagaagagagcgttatgaacttacgctcagta
ttcagcgagttaggtttgacgctgccgggtggcatgaagccagagccaaaagattacgcc
caagtaatgaacgaagtggctgagcgcccagaccatgagctgttacagaccatgatttta
cgctccatgaagcaagcgatttatgatccagaaaaccgcggtcactttggtttaggtctg
aaatcatatgcccactttacctcgccaattcgtcgttatcctgacttaactttgcatcgt
ggtattaaatacttactggcaaaagagcatggtcatggagataagcgctggacggaaacg
ggtggatggcactccgatatggacagcatgctgcaattgggcgagcactgctcactgact
gagcgtcgtgcagatgaagctacccgtgacgtcgcagattggttaaaatgtgacttcatg
caagaccaagtgggccaagtgtttactggacttatcactagcgtgacaggttttggtttc
tttgttcgcttaaatgacctgtttattgatggcttagtgcatatttcgactcttgataac
gactattatcgttatgatgcggttggacagcgcttaattggtgaatcttccggtacaact
tatcgtcttggcgatgaagtggaaatccgtgtagaagcggtacatatggatgagcgcacc
attgattttgctttaatttcaacgacacgaaaagcgaaaaatccgggtaaaaccacacgg
gataagatgaagaaagaagttaaaaatgcgacacgttcagcccgtcgaaaaggcgatgtg
agcaaagagaaaaacttcgaacctgattctgcatttcgtcgttcagagaaaaaaggcaag
aaagacagcaaggacgcaaaacctgaaggtaaaggaaacggtaaagcgaaaagcaaaaag
ccatccgataaaaccaaaaaaatcagtgccaagttaaaagcaaaacgcgtggcgaaaaaa
tcccaaaaacaagagggataa
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