Providencia zhejiangensis: ACE2AM_17795
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Entry
ACE2AM_17795 CDS
T10958
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pzn Providencia zhejiangensis
Pathway
pzn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACE2AM_17795 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzn03019
]
ACE2AM_17795 (rnr)
03016 Transfer RNA biogenesis [BR:
pzn03016
]
ACE2AM_17795 (rnr)
Enzymes [BR:
pzn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACE2AM_17795 (rnr)
Messenger RNA biogenesis [BR:
pzn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACE2AM_17795 (rnr)
Transfer RNA biogenesis [BR:
pzn03016
]
Prokaryotic type
tRNA degradation factors
ACE2AM_17795 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
XGY77726
LinkDB
All DBs
Position
complement(3938990..3941455)
Genome browser
AA seq
821 aa
AA seq
DB search
MSQDPFQEREAEKYESPIPSREFILELLTKRSAPAKREEIAQLLNLSSEEELEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGYGFLRVEGKKEDYYLSQDEMKRALH
GDVILAQPYGQDRKGRTEVRVVRVLEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
DQINGARMGNVVVVELVTRPQRRSQAVGHIIEVLGESMGTGMAVEIALRTHEIPHSWPPQ
VEKQVADLSEQVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVHCAPKKGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPGVDRLCMVCEMTVS
ASGRLSSYKFYEAVMNSHARLTYTKVWKILQGDEELREHYKALVPHIEQLHALYKALDDA
RIERGAISFESEEAKFIFNAERRIERIEPVERNDAHKLIEECMILANIAAARYVEKNEEP
ALYRVHDRPKEESVMNLRSVFSELGLTLPGGMKPEPKDYAQVMNEVADRPDHELLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLTLHRGIKYLLAKERGHTDHRWTPT
GGWHSDMDSMLQLGEHCSMTERRADEATRDVADWLKCDFMQDQVGQVFTGLITSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDAVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERT
IDFALISTTRKAKNPGKTARDRMKKEVKNATKSARSKRGDVSKDKNFEPDSAFRRSEKKG
KKTDKKSDNKAKGKKASDKTKKISAKLKAKRAAKKAQKQEG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccttttcaggaaagagaagcagaaaaatacgaatccccaattcctagc
agagaattcatactcgaactcctcactaaacgctcggcccctgcaaagcgcgaagaaata
gcacaattattgaatctctcttcagaagaagagttagaagccttacgccgccgtttacga
gcgatggagcgtgatgggcaattagtgtttactcgccgtcaatgctatgcgctaccagag
cgtttagatttacttaaaggcaaagtgataggccaccgtgatggctatggtttcttgcgc
gttgaaggtaaaaaagaagactactacctatcacaagatgagatgaaacgtgcattacat
ggcgatgtcattttagcacagccttatggtcaagaccgtaaagggcgcactgaggtgcgt
gttgttcgtgtacttgaacctcgtaacaatcaaattgttgggcgctattttattgaatca
ggaatggggtttgtggttcctgatgatagccgtttaagttttgatattttaattcctaaa
gaccaaatcaacggtgctcgtatgggtaacgtggtggtggttgaattggtcacaagacca
cagcgccgttctcaagcggttggacatattattgaagtattaggcgaaagtatgggtacc
ggtatggcagttgagattgccttgcgtactcatgaaatcccacattcatggccacctcaa
gtcgaaaaacaggtggcggatttaagtgagcaggttcctgaatcagcaaaaaaagggcgt
gtcgacttacgtgatttaccccttgtgacgattgatggtgaagatgctcgtgactttgat
gacgccgtacattgtgctccgaaaaaaggagggggttggcgtttatgggtggcgattgct
gatgtaagttattatgttcgtccacaaactgcacttgatgatgaagcacgtagtcggggt
aactccgtctattttccatcgcaagtggtacctatgctgccagaagtgctctcaaatggc
ctctgttcactgaacccaggtgttgatcgcctttgtatggtgtgtgaaatgacggtatct
gcgtcaggtcgcctatcttcctacaaattctatgaagccgtgatgaattcacacgcaagg
ctaacgtacaccaaagtatggaagattttacaaggtgatgaggagttgcgtgaacactat
aaggcattggttccgcatattgagcaattacatgcgctttataaagctctggatgatgca
cgtattgaacgtggtgcaatttcgtttgaatcagaagaagcaaaattcatctttaacgct
gaacgccgtatagaacgcatcgagcctgtagaacgtaatgacgctcataaactgattgaa
gagtgtatgattctagccaacatcgcagcggctcgctatgttgagaaaaatgaagagcct
gcactgtatcgtgtgcatgatcgtccaaaagaagagagcgtgatgaacttacgttccgtc
tttagtgaattgggcttaacgctaccaggtggcatgaagcctgagccgaaagattatgct
caagtcatgaatgaagttgctgaccgtcctgaccatgaattactgcaaacgatgatcttg
cgttcaatgaagcaggcgatttatgatcctgaaaatcgcggtcactttgggctggcttta
aaatcctacgcgcattttacgtcacctatccgccgttaccctgatctaacgttgcataga
gggattaaatacctacttgcgaaagagcgtgggcacaccgatcatcgttggacgccgaca
ggtggctggcattctgatatggatagcatgttacagctcggagagcattgttccatgacg
gaacgccgtgccgatgaagcgacacgcgatgtcgccgattggttaaaatgtgactttatg
caagaccaagtcggtcaagtctttacagggctaattaccagcgtgacaggttttggtttc
tttgttcgcttaaatgacctgtttattgatggcttagtgcatgtatcgacgctagataat
gattactaccgttatgatgcggtgggacaacgcttgattggtgagtcttccggaaccact
tatcgacttggcgatgaagtggagattcgcgttgaagcggtgcatatggatgaacgcacc
attgatttcgcattgatttcaactacgcgtaaagccaagaatcccggtaaaacagcacgt
gatagaatgaaaaaagaagttaaaaatgcaactaaatcagcacgcagtaaacgtggtgat
gtgagcaaagataaaaacttcgagcctgattcagcttttcgtcgttcagagaagaaaggc
aagaaaacagataaaaaatcagataataaggctaaagggaaaaaagcctctgataaaacc
aagaaaattagtgcaaaattaaaagctaaacgcgcagcgaaaaaagcccaaaaacaagaa
gggtaa
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