Phenylobacterium zucineum: PHZ_c0764
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Entry
PHZ_c0764 CDS
T00750
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHZ_c0764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pzu03019
]
PHZ_c0764
Enzymes [BR:
pzu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PHZ_c0764
Messenger RNA biogenesis [BR:
pzu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PHZ_c0764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACG77178
UniProt:
B4RG54
LinkDB
All DBs
Position
complement(843266..844678)
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AA seq
470 aa
AA seq
DB search
MTQFTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPI
LHRLAEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMR
ALAGGVDVLVATPGRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKR
RQNLFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAEL
FDDASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRAL
VATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNLLKD
IEKVTKQRIPNFDRRNDRHLGAATAALPDTGGKPERSERSAQPHRQGHQKKPNRNHSQGK
PGHRPQGGPARTEAGGGERPAFKGPRRGGGQRSGGGRSGGGSRSGVWSNH
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttcactgaccttggcctggccaagccgctgctcaaggcgctggccgacgaa
ggctacgtcaatcccaccccgatccaggcccaggcgatcccgggcgtcatggccggccgt
gacctgctgggcatcgcccagactggcaccggcaagaccgccgccttcgccctgccgatc
ctgcaccggctcgccgaggaccgccggcccgcgccgcggcgctcggcgcgcgtcctggtg
ctctcgcccacccgcgagctcgccacccagatcgccgagagcttcaaggcctacggccgc
cacctcggcctgtcggtcgcggtcatcttcggcggcgttaagtacggcccgcagatgcgc
gccttggccggcggcgtcgacgtgctggtggccacccccggccgcctgatcgaccacctg
caggagaagtccgtcgtcctcgaaggcgtcgagaccttcgtgctcgacgaggccgaccag
atgctggacatgggcttcatcgtcccgatccggcggatcgtgaagttcctgccgaagcgg
cgccagaacctgttcttctcggccaccatgccagccgagatcgagaagctgaccggcgag
atcctcaaccccaacccgctgaaggtgacggtgaccccgccgtccacgacggtggagcgg
atcaaccagcgcgtcctcttcgtcgagcagcagcgcaagcgcgccctgctggccgagctg
ttcgacgacgccagcttcaagcgcgtgatcgtcttcacccgcaccaagcgcggcgccgac
cgcgtggcccgcggcctggagcaggtgggcgtcgaggccgcctcgatccacggcgacaag
agccagggccagcgcgagcgggcgctggcggcgttcaaggccggcgacgtgcgcgccctg
gtcgccaccgacatcgccgcccggggcatcgacatcgacgcggtcagccacgtcgtccag
ttcgagctgccgaacgtgccggaagcctatgtccaccggatcggccggacggcgcgggcc
ggggccgacggctcggcggtggcgttctgcgccgacgacgagcggaacctgctgaaggac
atcgagaaggtgaccaagcagcggatccccaacttcgaccgccgcaacgaccgccacctg
ggcgcggcgaccgccgccctgcccgacacgggcggcaagcccgagcgctccgagcggtcg
gcccagccgcaccgccagggtcaccagaagaagcccaaccgcaaccacagccagggcaag
cccggccatcgtccgcagggtggtcccgcgcggaccgaggcgggcggcggcgagcgtccg
gccttcaagggcccgcgccgcggcgggggtcagcgttcgggcggcgggcgctcaggcggc
gggagccgctcgggcgtctggtccaaccactag
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