Phenylobacterium zucineum: PHZ_c1219
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Entry
PHZ_c1219 CDS
T00750
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHZ_c1219 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pzu03021
]
PHZ_c1219 (rpoC)
03400 DNA repair and recombination proteins [BR:
pzu03400
]
PHZ_c1219 (rpoC)
Enzymes [BR:
pzu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PHZ_c1219 (rpoC)
Transcription machinery [BR:
pzu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PHZ_c1219 (rpoC)
DNA repair and recombination proteins [BR:
pzu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PHZ_c1219 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACG77633
UniProt:
B4R8K6
LinkDB
All DBs
Position
1404727..1408920
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVLNIFNPVQAAPTFDQIRIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKS
LPSRIALMLDMALKDVERVLYFENYIVTEPGLTPLKLHQLLSEDDYLRFQEEFGDDSFTA
EIGAEAVQGLLRGIDLEKEAENLREELKTTTSEMKLKKASKRLKLIENFIESGNKPEWMV
LTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSLVKDGEPGEGKAFASLGEIEAALD
AGVVTLHSKIRCRYTEMDADGNLVTKVIETSPGRMKIAALFPQHPAVGHRLLEKNLTKKE
IGNLIDTVYRHCGQKATVIFADQIMGLGFREAAKAGISFGKDDIVIPARKAPIVEETRKL
VEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAEVSSAPVDENGRQAEINSIFM
MSNSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVQEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITEEDCGTTRGITLRAVVEGGDVLVSLGQRILGRFA
AEDVKDPGSNDVIVPADSYLDENMIELVESAGVQSVKVRSVLTCETKTGVCGACYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFYESANEGVAKISGGNT
VTAPDGALISMSRNLMLTVQVDGKDRESYKVPYGARLRVKDGEGVKRGQRLAEWDPYTTP
IITEVGGKVRFEDLVENVSFREEADEATGISNRVVVDWRASTKGSDLRPAMAVLGEDGSY
KRLSNGGEARSLLPVGAILSVGDGDEVKPGEVLARMPTEGAKTRDITGGLPRVAELFEAR
RPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEDGGEAVEFLIPKGKHIAVHDGDVIRKGE
YLIDGNPDPHDILRIQGIEALADFLVNEIQEVYRLQGVPINDKHIETIVRQMLQKVEILE
PGDTGLLKGDHLDKIEVDEENAKAEARGGRPALTQPVLLGITKASLQTRSFISAASFQET
TRVLTEASVQGKIDTLEGLKENVIVGRLIPAGTGSYLRNLQRIAAKRDEALTQSREEAME
PLPAEIADAAVGEQVES
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaatccggtccaggccgccccgaccttcgaccag
atccgcatcgcgctcgcctcgccggaaaagatccgctcgtggtcgttcggcgagatcaag
aagcccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgcatctttggcccgacgaaggactacgagtgcctttgcggcaagtacaagcggatgaaa
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcaccctggcccgcgtccgccgc
gagcggatgggccacatcgagctggccagcccggtcgcccacatctggttcctgaagagc
ctgccgagccgcatcgcgctgatgctcgacatggcgctgaaggacgtcgagcgggtcctc
tacttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagctgcaccagctg
ctgtcggaagacgactacctgcgcttccaggaggagttcggcgacgacagcttcaccgcc
gagatcggcgccgaggcggtccagggcctgctgcgcggcatcgacctcgagaaggaggcc
gagaacctccgcgaggagctgaagaccaccacgtccgagatgaagctgaagaaggcgtcc
aagcgcctgaagctcatcgagaacttcatcgagagcggcaacaagcccgagtggatggtg
ctgacggtgatccccgtgatcccgccggaactgcgcccgctggtgccgctggacggcggc
cgcttcgcgacctcggacctgaacgacctctaccgccgggtcatcaaccggaacaaccgc
ctgaagcgcctcatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcggatg
ctgcaggaagccgtcgacgccctgttcgacaacggccgccgcggccgcgtgatcacgggc
gccaacaagcgtccgctgaagtcgctggccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggc
cccgagctgaagctgcacgagtgcggcctgcccaagaagatggcgctcgagctgttcaag
ccgttcatctacgcgcgcctggacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtggagcgtgagcagccggccgtctgggacatcctggacgaggtgatccgcgag
cacccggtgctgctgaaccgcgccccgaccctgcaccgcctgggcatccaggcgttcgag
cccaagctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtccacgtgccgctctcgctggaagcccagctg
gaagcgcgcgtgctgatgatgagcacgaacaacatcctgtcgcccgccaacggccggccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctgtcgctggtgaaggac
ggcgagccgggcgaaggcaaggcgttcgccagcctgggcgagatcgaggccgcgctcgac
gccggcgtcgtcacgctgcactcgaagatccgctgccgctacaccgagatggacgccgac
gggaacctggtgaccaaggtcatcgagaccagccccggccggatgaagatcgccgcgctg
ttcccgcagcacccggcggtcggccatcgccttctggagaagaacctcaccaagaaggaa
atcggcaacctgatcgacaccgtctaccggcactgcggccagaaggcgaccgtcatcttc
gccgaccagatcatgggcctgggcttccgcgaggcggccaaggcgggcatctcgttcggc
aaggacgacatcgtcatcccggcccgtaaggcgccgatcgtcgaggagacccgcaagctc
gtcgaggagtacgagcagcagtacgccgacggcctgatcaccaagggcgagaagtacaac
aaggtggtcgacgcctgggccaaggcgaccgaccgcgtcgccgacgagatgatggccgag
gtgtcctccgcgccggtcgacgagaacggccgccaggccgagatcaactcgatcttcatg
atgagcaactcgggcgcccggggctcgcaggcccagatgaagcagctcggcgggatgcgc
ggcctgatggccaagccgtccggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgacggtgcaggagtacttcaactccacgcacggcgcccgtaagggcctggcc
gacaccgctctgaagaccgccaactcgggctacctgacccgccgcctcgtcgacgtggcg
caggactgcatcatcaccgaggaagactgcggcaccacccggggcatcaccctgcgggcc
gtggtcgagggcggcgacgtcctcgtctcgctgggccagcgcatcctgggccgcttcgcg
gccgaggacgtgaaggatccgggcagcaacgacgtcatcgttcccgccgacagctacctc
gacgagaacatgatcgagctggtcgagagcgccggcgtccagtcggtgaaggtccggtcg
gtcctgacctgcgagaccaagaccggcgtctgcggcgcctgctacggccgcgatctggcg
cgcggcacgccggtgaacatcggcgaggccgtgggcgtcatcgccgcccagtcgatcggc
gagccgggcacccagctgacgatgcggaccttccacatcggcggcaccgcccaggtggcc
gagcagtcgttctacgagagcgccaacgagggcgtcgccaagatctcgggcggcaacacc
gtgaccgctccggacggcgcgctgatctcgatgagccgcaacctgatgctgaccgtccag
gtcgacggcaaggaccgggaatcctacaaggttccgtacggcgcccgcctgcgggtgaag
gacggcgaaggcgtcaagcgcggccagcgcctggcggagtgggacccctacaccacgccg
atcatcaccgaagtgggcggcaaggtccgcttcgaggacctggtcgagaacgtctcgttc
cgcgaggaggccgacgaggccaccggcatctcgaaccgcgtcgtcgtcgactggcgcgcg
tcgaccaagggctcggacctgcgtccggccatggcggtgctgggcgaggacggctcctac
aagcgcctgtcgaacggcggcgaggcccgctccctgctgcccgtgggcgccattctctcc
gtcggcgacggcgacgaggtgaagcccggcgaggtgctggcccgtatgcccacggaaggc
gccaagacgcgcgacatcaccggcggtctgccgcgggtggccgagctgttcgaggcgcgt
cgtccgaaggactgcgcggtcatcgccgagatggacggccgggtggagttcggtcgggac
tacaagaacaagcgccgcatcaagatcacgccggaggacggcggcgaggcggtcgagttc
ctgatcccgaagggcaagcacatcgccgtccacgacggcgacgtcatccgcaagggcgag
tacctcatcgacggcaacccggacccgcacgacatcctgcggatccagggcatcgaggcg
ctggcggacttcctggtgaacgagatccaggaggtctaccgactgcagggcgtgccgatc
aacgacaagcacatcgagacgatcgtccgtcagatgctgcagaaggtcgagatcctcgag
ccgggcgacaccggcctgctcaagggcgaccacctcgacaagatcgaggtggacgaggag
aacgccaaggcggaagcccgcggcggccgtccggcgctcacccagccggtgctgctcggc
atcaccaaggcgagcctgcagacccgcagcttcatctcggccgcgtcgttccaggagacg
acccgcgtcctcaccgaggcctcggtgcagggcaagatcgacaccctggaaggcctgaag
gagaacgtgatcgtgggccgcctcatcccggcgggcacgggctcgtacctgcgcaacctg
cagcgcatcgccgccaagcgcgacgaggcgctcacccagagccgcgaggaggccatggag
ccgcttccggccgagatcgccgacgccgcggtcggcgagcaggtggagtcctaa
DBGET
integrated database retrieval system
