Phenylobacterium zucineum: PHZ_c1619
Help
Entry
PHZ_c1619 CDS
T00750
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pzu
Phenylobacterium zucineum
Pathway
pzu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pzu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHZ_c1619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pzu03400
]
PHZ_c1619
Enzymes [BR:
pzu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHZ_c1619
DNA repair and recombination proteins [BR:
pzu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PHZ_c1619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACG78030
UniProt:
B4RAX9
LinkDB
All DBs
Position
complement(1823077..1826565)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAADGSRPVSAAQLRRVADDPGRLDLVGAPEGFDALVMADVVKARKGLSVFVARDGARLS
AFADAFRFFAQNVEVLTLPAWDCLPYDRIGPSPGVAAQRMATLSRLAEGLDEKKPALLVT
SVPSLLQRVPPVKAVKRASYSAKVGNSVEIADLERYFAVNGYARASTVSDRGEFAIRGGV
IDVFPPTAEEPVRLDLFGDTLESIRAFDPETQRSTKQLKEVSLLPVSEALLDADAISRFR
TGYLEAFGAPGDDPLYAAISEGGRRAGMEHYLPLFYGEMATLFDYLPKDALVGLDHLSRD
ARDERLEMIADAYESRAATERKVQYHPLEPERLYLDKDEWSERLAKRATRRFSAFQEAEG
EAVLDMGARQGRDFGPERKLDSVNLFEATADHAKKLSSDGKRVLFASWSEGSSDRLGHML
ADHGLKTLPFAPYWDAAKAADPKTPQRVVLPLDHGFETDSLAVISETDILGDRLARPRKR
RRAANFLAEASALTPGDLVVHIDHGIGRYDGLKTLDVQGAPHDTLELQYGGEAKLYLPVE
NIDLLTRYGADAENVQLDRLGGAAWQARKARAKERLREMADGLIRIAAERATKATDAVEP
PQGVFDEFCARFPYEETEDQLMAIGDVLEDLAGGKPMDRLVCGDVGFGKTEVALRAAFVV
AMSGQQVAVVAPTTLLARQHYKTFTERFEGWPVKVRRLSRLVTAKEAAETREGLAKGEVE
IVVGTHAILSKQVSFKNLGLVIVDEEQHFGVKHKEKLKELRADVHLLTLTATPIPRTLQM
SLSGIREMSIIATPPVDRLAVRTYITPWDPVVIREALLREKYRGGQAYFVAPRINDLPEL
ERFLREQVPEVKFVVGHGQMAPTQLEEVMSAFYDGQYDVLLSTTIVESGLDIPTANTLII
HRADMFGLAQLYQLRGRVGRSKSRAYAYLTTPAEKQITLSAEKRLKVLQSLDNLGAGFQL
ASHDLDIRGGGNLLGEEQSGHIREIGVELYQQMLEDAVNELKERAGAEGVPDRGWSPQIN
TGAAVLLPEDYIPDLNVRLAIYRRISDAERVDDREALAAELIDRFGPLPPEADQLLKVVA
IKGLCRQANVAKIDVGPKGAVVTFRNDDFPNPMGLVQFVAKNQVAWKVRPDHKVVVKGEW
ETPVQRLNAAEKVLAELAKLAA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtggcggctgacggctcccgacccgtaagcgcggcccagctgcggcgcgtcgccgacgat
cccggccggctggacctggtgggcgcgcccgagggcttcgacgccctcgtcatggccgac
gtggtcaaggcgcgcaaaggcctgtcggtgttcgtcgcccgcgacggggcgaggctttcg
gccttcgccgacgccttccgcttcttcgcccagaacgtcgaggtcctgacgctccccgcc
tgggactgcctgccgtacgaccggatcggcccgtcgccgggcgtcgcggcccagcggatg
gccacgctgtcgcgcctggccgagggcctggacgagaagaagccggcgctgctggtcacc
tcggtcccctcgctgctccagcgcgtgccgccggtgaaggcggtgaagcgggccagctat
tcggcgaaggtcggcaactcggtcgagatcgccgacctcgagcgctacttcgcggtgaat
ggctacgcccgggcctccaccgtctcggaccgcggcgagttcgccatccgcggcggggtg
atcgacgtcttcccgcccacggccgaggagccggtgcgcctcgacctgttcggcgacacc
ctcgagagcatccgcgccttcgatcccgagacccagcgctcgacgaagcagctcaaggag
gtctccctcctgccggtcagcgaggccctgctggacgccgacgccatcagccggttccgc
accggctatctggaggccttcggggcgcccggcgacgatccgctctacgccgccatctcc
gagggcggccggcgggccggcatggagcactacctgccgctgttctacggcgagatggcg
accctgttcgactacctgccgaaggacgcgctggtcggcctcgaccatctctcgcgcgac
gcccgcgacgagcggctggagatgatcgccgacgcctacgagagccgggcggcgaccgag
cgcaaggtccagtaccacccgctggagcccgagcgcctctacctcgacaaggacgagtgg
tccgagcggctggcgaagcgggccacccgccggttctccgccttccaggaggccgagggc
gaggcggtgctcgacatgggcgcgcgccagggccgcgacttcggtcccgagcgcaagctg
gacagcgtcaacctcttcgaggccaccgccgaccacgccaagaagttgtcgtcggacggc
aagcgggtgctgttcgcctcgtggtccgagggctcctccgaccgcctcggccacatgctg
gccgaccacgggctcaagaccctgccgttcgccccgtactgggacgcggccaaggcggcc
gatccgaagaccccgcagcgggtcgtcctgcccctcgaccacggcttcgagaccgacagc
ctggcggtcatctccgagaccgacatcctgggcgatcgcctggcccggccgcgcaagcgc
cgccgcgcggccaacttcctggccgaagcctcggccctgacgccgggcgacctcgtggtc
cacatcgaccacggcatcggccgctacgacgggctgaaaaccctggacgtccagggcgcg
ccgcacgacacgctcgagctgcagtacggcggcgaggcgaagctctacctgcccgtcgag
aacatcgaccttctgacccgctacggcgccgacgccgagaacgtgcagctggaccgcctc
ggcggcgccgcctggcaggcccgcaaggcccgcgccaaggagcggctgcgcgagatggcc
gacggcctcatccgcatcgccgccgagcgcgccaccaaggccaccgacgccgtcgagccg
ccgcagggcgtgttcgacgagttctgcgcccggttcccctacgaggagaccgaggaccag
ctcatggccatcggcgacgtgctggaagacctggcgggcggcaagccgatggaccggctg
gtctgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgccgccttcgtggtc
gccatgagcggccagcaggtggccgtggtcgcgccgacgaccctcctggcgcgccagcac
tacaagaccttcaccgagcggttcgagggctggccggtgaaggtgcgccgcctctcacgg
ctggtgacggccaaggaggctgccgagacccgcgagggcctggccaagggcgaggtcgag
atcgtcgtcggcacccacgccatcctgtcgaagcaggtctcgttcaagaacctgggcctc
gtcatcgtcgacgaggagcagcacttcggggtcaagcacaaggagaagctcaaggagctc
cgcgccgacgtgcacctgctgaccctgacggcgacgcccatcccgcgcaccctgcagatg
tcgctgtcgggcatccgcgagatgtcgatcatcgccaccccgccggtcgaccggctggcg
gtgcggacctacatcacgccctgggatccggtggtcatccgcgaggcgctgctgcgcgag
aagtaccgcggcggccaggcctatttcgtcgccccgcggatcaacgacctgcccgagctg
gagcgtttcctgcgcgagcaggtccccgaggtgaagttcgtggtcggccacggccagatg
gctccgacccagctcgaggaggtgatgagcgccttctacgacggccagtacgacgtgctg
ctgtcgaccacgatcgtggagagcggcctcgacatcccgaccgccaacaccctcatcatc
caccgggccgacatgttcggcctggctcagctctaccagctgcggggccgggtcggccgc
tccaagagccgcgcctacgcctatctgaccaccccggccgagaagcagatcaccctgtcg
gccgagaagcgcctgaaggtgctgcagtcgctggacaacctgggcgccggcttccagctc
gccagccacgacctcgacatccgcggcggcggcaacctgctgggcgaggagcagtccggc
cacatccgcgagatcggggtcgagctctaccagcagatgctcgaggacgccgtcaacgag
ctgaaggagcgggccggcgccgagggcgtccctgaccggggctggtcgccgcagatcaac
actggcgcggccgtgctgctgcccgaggactacatccccgacctgaacgtgcgcctcgcc
atctaccggcgcatctcggacgccgagcgggtggacgaccgcgaggccctggccgccgag
ctgatcgaccgcttcgggccgctgccgcccgaggccgaccagctgctgaaggtggtggcc
atcaagggcctctgccgccaggcgaacgtggcgaagatcgacgtgggccccaagggcgcc
gtcgtcaccttccgcaacgacgacttcccgaacccgatgggcctcgtccagttcgtggcc
aagaaccaggtcgcctggaaggtccgtcccgaccacaaggtggtggtcaagggcgagtgg
gagacgccggtccagcgcctcaacgcggccgagaaggtcctggccgagctggcgaagctg
gcggcctag
DBGET
integrated database retrieval system
